Strain Fitness in Dechlorosoma suillum PS around Dsui_2073

Experiment: ALP with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2072 and Dsui_2073 are separated by 153 nucleotidesDsui_2073 and Dsui_2074 are separated by 218 nucleotides Dsui_2072: Dsui_2072 - Pirin-related protein, at 2,190,781 to 2,191,698 _2072 Dsui_2073: Dsui_2073 - Uncharacterized protein conserved in bacteria (DUF2242), at 2,191,852 to 2,192,358 _2073 Dsui_2074: Dsui_2074 - phasin family protein, at 2,192,577 to 2,192,972 _2074 Position (kb) 2191 2192 2193Strain fitness (log2 ratio) -2 -1 0 1 2at 2191.082 kb on - strandat 2191.369 kb on - strand, within Dsui_2072at 2191.434 kb on + strandat 2191.454 kb on + strandat 2191.454 kb on + strand, within Dsui_2072at 2191.454 kb on + strand, within Dsui_2072at 2191.454 kb on + strand, within Dsui_2072at 2191.462 kb on - strandat 2191.496 kb on - strand, within Dsui_2072at 2191.552 kb on + strand, within Dsui_2072at 2191.575 kb on + strand, within Dsui_2072at 2191.599 kb on + strand, within Dsui_2072at 2191.619 kb on + strandat 2191.780 kb on + strandat 2192.118 kb on + strandat 2192.212 kb on + strandat 2192.439 kb on + strandat 2192.525 kb on + strandat 2192.651 kb on + strandat 2192.676 kb on + strand, within Dsui_2074at 2192.822 kb on + strandat 2192.841 kb on - strand, within Dsui_2074at 2192.862 kb on - strand, within Dsui_2074at 2192.862 kb on - strand, within Dsui_2074at 2192.909 kb on + strand, within Dsui_2074at 2192.909 kb on + strandat 2192.909 kb on + strandat 2192.917 kb on - strand, within Dsui_2074at 2192.917 kb on - strand, within Dsui_2074at 2192.917 kb on - strand, within Dsui_2074at 2192.948 kb on + strandat 2192.955 kb on + strandat 2193.000 kb on - strandat 2193.022 kb on - strandat 2193.039 kb on + strandat 2193.278 kb on + strandat 2193.286 kb on - strandat 2193.286 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrate 50 mM
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2,191,082 - -0.9
2,191,369 - Dsui_2072 0.64 -0.3
2,191,434 + +0.7
2,191,454 + +0.7
2,191,454 + Dsui_2072 0.73 -0.9
2,191,454 + Dsui_2072 0.73 +0.7
2,191,454 + Dsui_2072 0.73 -1.3
2,191,462 - +0.7
2,191,496 - Dsui_2072 0.78 -1.3
2,191,552 + Dsui_2072 0.84 -1.3
2,191,575 + Dsui_2072 0.86 -1.3
2,191,599 + Dsui_2072 0.89 -0.9
2,191,619 + -0.3
2,191,780 + +0.7
2,192,118 + +0.7
2,192,212 + +0.7
2,192,439 + +0.7
2,192,525 + +0.7
2,192,651 + +0.7
2,192,676 + Dsui_2074 0.25 -2.3
2,192,822 + +0.7
2,192,841 - Dsui_2074 0.67 -0.0
2,192,862 - Dsui_2074 0.72 +0.1
2,192,862 - Dsui_2074 0.72 -1.0
2,192,909 + Dsui_2074 0.84 +0.7
2,192,909 + +0.7
2,192,909 + +0.7
2,192,917 - Dsui_2074 0.86 -0.8
2,192,917 - Dsui_2074 0.86 +2.3
2,192,917 - Dsui_2074 0.86 -1.4
2,192,948 + +0.7
2,192,955 + +0.7
2,193,000 - -1.6
2,193,022 - -2.4
2,193,039 + +0.7
2,193,278 + +0.7
2,193,286 - -0.9
2,193,286 - +0.7

Or see this region's nucleotide sequence