Strain Fitness in Dechlorosoma suillum PS around Dsui_1993

Experiment: ALP with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1990 and Dsui_1991 overlap by 35 nucleotidesDsui_1991 and Dsui_1992 are separated by 15 nucleotidesDsui_1992 and Dsui_1993 are separated by 94 nucleotidesDsui_1993 and Dsui_1994 are separated by 19 nucleotidesDsui_1994 and Dsui_1995 are separated by 186 nucleotides Dsui_1990: Dsui_1990 - primosomal replication protein N, at 2,099,121 to 2,099,411 _1990 Dsui_1991: Dsui_1991 - ribosomal protein S18, at 2,099,377 to 2,099,655 _1991 Dsui_1992: Dsui_1992 - ribosomal protein L9, at 2,099,671 to 2,100,120 _1992 Dsui_1993: Dsui_1993 - replicative DNA helicase, at 2,100,215 to 2,101,696 _1993 Dsui_1994: Dsui_1994 - NADPH-dependent FMN reductase, at 2,101,716 to 2,102,207 _1994 Dsui_1995: Dsui_1995 - transglutaminase-like enzyme, predicted cysteine protease, at 2,102,394 to 2,103,605 _1995 Position (kb) 2100 2101 2102Strain fitness (log2 ratio) -3 -2 -1 0 1at 2099.769 kb on + strand, within Dsui_1992at 2099.891 kb on + strand, within Dsui_1992at 2100.163 kb on + strandat 2100.218 kb on - strandat 2100.228 kb on + strandat 2100.228 kb on + strandat 2101.750 kb on - strandat 2101.845 kb on - strand, within Dsui_1994at 2101.864 kb on - strandat 2101.950 kb on + strand, within Dsui_1994at 2102.163 kb on - strandat 2102.261 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrate 50 mM
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2,099,769 + Dsui_1992 0.22 -2.9
2,099,891 + Dsui_1992 0.49 -1.7
2,100,163 + +0.5
2,100,218 - -0.1
2,100,228 + +0.2
2,100,228 + +0.2
2,101,750 - +0.9
2,101,845 - Dsui_1994 0.26 -1.4
2,101,864 - +0.9
2,101,950 + Dsui_1994 0.48 +0.2
2,102,163 - +0.9
2,102,261 - -1.9

Or see this region's nucleotide sequence