Experiment: ALP with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1919 and Dsui_1920 overlap by 17 nucleotides Dsui_1920 and Dsui_1921 overlap by 23 nucleotides Dsui_1921 and Dsui_1922 are separated by 14 nucleotides
Dsui_1919: Dsui_1919 - Mg chelatase, cobalamin biosynthesis protein CobN, at 2,022,224 to 2,026,201
_1919
Dsui_1920: Dsui_1920 - hypothetical protein, at 2,026,185 to 2,026,526
_1920
Dsui_1921: Dsui_1921 - biopolymer transport protein, at 2,026,504 to 2,027,112
_1921
Dsui_1922: Dsui_1922 - outer membrane receptor for ferrienterochelin and colicins, at 2,027,127 to 2,029,406
_1922
Position (kb)
2026
2027
2028 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2025.598 kb on + strand, within Dsui_1919 at 2025.622 kb on + strand at 2025.657 kb on + strand at 2025.699 kb on + strand, within Dsui_1919 at 2025.800 kb on + strand, within Dsui_1919 at 2025.945 kb on - strand at 2026.054 kb on + strand at 2026.074 kb on + strand at 2026.106 kb on - strand at 2026.366 kb on + strand, within Dsui_1920 at 2026.366 kb on + strand, within Dsui_1920 at 2026.393 kb on + strand, within Dsui_1920 at 2026.503 kb on + strand at 2026.553 kb on - strand at 2026.800 kb on - strand, within Dsui_1921 at 2027.255 kb on + strand at 2027.353 kb on + strand at 2027.424 kb on + strand, within Dsui_1922 at 2027.432 kb on - strand at 2027.518 kb on - strand, within Dsui_1922 at 2027.518 kb on - strand, within Dsui_1922 at 2027.646 kb on - strand, within Dsui_1922 at 2027.677 kb on + strand, within Dsui_1922 at 2027.691 kb on + strand, within Dsui_1922 at 2027.699 kb on - strand, within Dsui_1922 at 2027.714 kb on + strand at 2027.722 kb on + strand, within Dsui_1922 at 2027.798 kb on - strand, within Dsui_1922 at 2027.829 kb on + strand at 2027.844 kb on - strand, within Dsui_1922 at 2027.890 kb on - strand, within Dsui_1922 at 2027.936 kb on - strand at 2028.010 kb on - strand, within Dsui_1922 at 2028.102 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 50 mM remove 2,025,598 + Dsui_1919 0.85 -0.2 2,025,622 + +0.8 2,025,657 + -0.2 2,025,699 + Dsui_1919 0.87 -0.2 2,025,800 + Dsui_1919 0.90 +0.8 2,025,945 - +0.8 2,026,054 + -0.2 2,026,074 + +0.8 2,026,106 - -0.7 2,026,366 + Dsui_1920 0.53 +0.8 2,026,366 + Dsui_1920 0.53 -0.2 2,026,393 + Dsui_1920 0.61 -1.2 2,026,503 + -1.2 2,026,553 - +2.4 2,026,800 - Dsui_1921 0.49 -0.2 2,027,255 + -0.5 2,027,353 + +0.8 2,027,424 + Dsui_1922 0.13 -0.7 2,027,432 - +0.8 2,027,518 - Dsui_1922 0.17 -0.2 2,027,518 - Dsui_1922 0.17 -2.2 2,027,646 - Dsui_1922 0.23 +0.8 2,027,677 + Dsui_1922 0.24 +0.8 2,027,691 + Dsui_1922 0.25 -0.2 2,027,699 - Dsui_1922 0.25 -0.2 2,027,714 + +0.8 2,027,722 + Dsui_1922 0.26 -0.2 2,027,798 - Dsui_1922 0.29 -0.2 2,027,829 + +0.8 2,027,844 - Dsui_1922 0.31 -1.2 2,027,890 - Dsui_1922 0.33 -0.2 2,027,936 - +0.8 2,028,010 - Dsui_1922 0.39 -0.2 2,028,102 - +0.8
Or see this region's nucleotide sequence