Strain Fitness in Dechlorosoma suillum PS around Dsui_1921

Experiment: ALP with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1919 and Dsui_1920 overlap by 17 nucleotidesDsui_1920 and Dsui_1921 overlap by 23 nucleotidesDsui_1921 and Dsui_1922 are separated by 14 nucleotides Dsui_1919: Dsui_1919 - Mg chelatase, cobalamin biosynthesis protein CobN, at 2,022,224 to 2,026,201 _1919 Dsui_1920: Dsui_1920 - hypothetical protein, at 2,026,185 to 2,026,526 _1920 Dsui_1921: Dsui_1921 - biopolymer transport protein, at 2,026,504 to 2,027,112 _1921 Dsui_1922: Dsui_1922 - outer membrane receptor for ferrienterochelin and colicins, at 2,027,127 to 2,029,406 _1922 Position (kb) 2026 2027 2028Strain fitness (log2 ratio) -2 -1 0 1 2at 2025.598 kb on + strand, within Dsui_1919at 2025.622 kb on + strandat 2025.657 kb on + strandat 2025.699 kb on + strand, within Dsui_1919at 2025.800 kb on + strand, within Dsui_1919at 2025.945 kb on - strandat 2026.054 kb on + strandat 2026.074 kb on + strandat 2026.106 kb on - strandat 2026.366 kb on + strand, within Dsui_1920at 2026.366 kb on + strand, within Dsui_1920at 2026.393 kb on + strand, within Dsui_1920at 2026.503 kb on + strandat 2026.553 kb on - strandat 2026.800 kb on - strand, within Dsui_1921at 2027.255 kb on + strandat 2027.353 kb on + strandat 2027.424 kb on + strand, within Dsui_1922at 2027.432 kb on - strandat 2027.518 kb on - strand, within Dsui_1922at 2027.518 kb on - strand, within Dsui_1922at 2027.646 kb on - strand, within Dsui_1922at 2027.677 kb on + strand, within Dsui_1922at 2027.691 kb on + strand, within Dsui_1922at 2027.699 kb on - strand, within Dsui_1922at 2027.714 kb on + strandat 2027.722 kb on + strand, within Dsui_1922at 2027.798 kb on - strand, within Dsui_1922at 2027.829 kb on + strandat 2027.844 kb on - strand, within Dsui_1922at 2027.890 kb on - strand, within Dsui_1922at 2027.936 kb on - strandat 2028.010 kb on - strand, within Dsui_1922at 2028.102 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrate 50 mM
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2,025,598 + Dsui_1919 0.85 -0.2
2,025,622 + +0.8
2,025,657 + -0.2
2,025,699 + Dsui_1919 0.87 -0.2
2,025,800 + Dsui_1919 0.90 +0.8
2,025,945 - +0.8
2,026,054 + -0.2
2,026,074 + +0.8
2,026,106 - -0.7
2,026,366 + Dsui_1920 0.53 +0.8
2,026,366 + Dsui_1920 0.53 -0.2
2,026,393 + Dsui_1920 0.61 -1.2
2,026,503 + -1.2
2,026,553 - +2.4
2,026,800 - Dsui_1921 0.49 -0.2
2,027,255 + -0.5
2,027,353 + +0.8
2,027,424 + Dsui_1922 0.13 -0.7
2,027,432 - +0.8
2,027,518 - Dsui_1922 0.17 -0.2
2,027,518 - Dsui_1922 0.17 -2.2
2,027,646 - Dsui_1922 0.23 +0.8
2,027,677 + Dsui_1922 0.24 +0.8
2,027,691 + Dsui_1922 0.25 -0.2
2,027,699 - Dsui_1922 0.25 -0.2
2,027,714 + +0.8
2,027,722 + Dsui_1922 0.26 -0.2
2,027,798 - Dsui_1922 0.29 -0.2
2,027,829 + +0.8
2,027,844 - Dsui_1922 0.31 -1.2
2,027,890 - Dsui_1922 0.33 -0.2
2,027,936 - +0.8
2,028,010 - Dsui_1922 0.39 -0.2
2,028,102 - +0.8

Or see this region's nucleotide sequence