Strain Fitness in Dechlorosoma suillum PS around Dsui_1666

Experiment: ALP with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1664 and Dsui_1665 are separated by 33 nucleotidesDsui_1665 and Dsui_1666 overlap by 16 nucleotidesDsui_1666 and Dsui_1667 are separated by 79 nucleotides Dsui_1664: Dsui_1664 - putative periplasmic protein, at 1,748,330 to 1,748,854 _1664 Dsui_1665: Dsui_1665 - hypothetical protein, at 1,748,888 to 1,749,547 _1665 Dsui_1666: Dsui_1666 - putative iron-regulated protein, at 1,749,532 to 1,750,212 _1666 Dsui_1667: Dsui_1667 - TonB-dependent siderophore receptor, at 1,750,292 to 1,752,595 _1667 Position (kb) 1749 1750 1751Strain fitness (log2 ratio) -3 -2 -1 0 1at 1748.550 kb on - strand, within Dsui_1664at 1748.564 kb on + strand, within Dsui_1664at 1748.661 kb on + strandat 1748.735 kb on - strand, within Dsui_1664at 1748.906 kb on + strandat 1748.935 kb on + strandat 1748.949 kb on - strandat 1749.069 kb on + strand, within Dsui_1665at 1749.077 kb on - strand, within Dsui_1665at 1749.154 kb on + strand, within Dsui_1665at 1749.185 kb on - strand, within Dsui_1665at 1749.358 kb on - strand, within Dsui_1665at 1749.513 kb on + strandat 1749.530 kb on + strandat 1749.538 kb on - strandat 1749.538 kb on - strandat 1750.221 kb on + strandat 1750.235 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrate 50 mM
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1,748,550 - Dsui_1664 0.42 -0.1
1,748,564 + Dsui_1664 0.45 -1.3
1,748,661 + -0.7
1,748,735 - Dsui_1664 0.77 -0.4
1,748,906 + +0.3
1,748,935 + -2.5
1,748,949 - -0.4
1,749,069 + Dsui_1665 0.27 +0.3
1,749,077 - Dsui_1665 0.29 +0.0
1,749,154 + Dsui_1665 0.40 -3.0
1,749,185 - Dsui_1665 0.45 -0.7
1,749,358 - Dsui_1665 0.71 -0.2
1,749,513 + +0.3
1,749,530 + -1.3
1,749,538 - -0.1
1,749,538 - -0.1
1,750,221 + +0.3
1,750,235 + -1.3

Or see this region's nucleotide sequence