Experiment: ALP with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1557 and Dsui_1558 are separated by 55 nucleotides Dsui_1558 and Dsui_1559 are separated by 246 nucleotides Dsui_1559 and Dsui_1560 are separated by 151 nucleotides
Dsui_1557: Dsui_1557 - 3-phosphoglycerate kinase, at 1,624,190 to 1,625,374
_1557
Dsui_1558: Dsui_1558 - glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase, at 1,625,430 to 1,626,476
_1558
Dsui_1559: Dsui_1559 - hypothetical protein, at 1,626,723 to 1,627,292
_1559
Dsui_1560: Dsui_1560 - glyceraldehyde-3-phosphate dehydrogenase, type I, at 1,627,444 to 1,628,472
_1560
Position (kb)
1625
1626
1627 Strain fitness (log2 ratio)
-2
-1
0
1 at 1625.435 kb on + strand at 1626.584 kb on + strand at 1626.703 kb on + strand at 1626.705 kb on + strand at 1626.711 kb on - strand at 1626.721 kb on - strand at 1626.761 kb on + strand at 1626.790 kb on + strand, within Dsui_1559 at 1626.819 kb on + strand, within Dsui_1559 at 1626.849 kb on - strand, within Dsui_1559 at 1626.888 kb on + strand, within Dsui_1559 at 1626.893 kb on + strand, within Dsui_1559 at 1626.920 kb on - strand, within Dsui_1559 at 1626.930 kb on + strand, within Dsui_1559 at 1626.959 kb on + strand, within Dsui_1559 at 1627.018 kb on + strand, within Dsui_1559 at 1627.162 kb on + strand, within Dsui_1559 at 1627.203 kb on + strand, within Dsui_1559 at 1627.239 kb on + strand at 1627.246 kb on - strand at 1627.262 kb on + strand at 1627.287 kb on + strand at 1627.314 kb on - strand at 1627.335 kb on + strand at 1627.348 kb on + strand at 1627.362 kb on + strand at 1627.370 kb on - strand at 1627.413 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 50 mM remove 1,625,435 + +0.4 1,626,584 + +0.4 1,626,703 + -1.2 1,626,705 + -1.2 1,626,711 - -2.2 1,626,721 - -1.6 1,626,761 + -2.4 1,626,790 + Dsui_1559 0.12 -1.2 1,626,819 + Dsui_1559 0.17 +0.4 1,626,849 - Dsui_1559 0.22 -0.6 1,626,888 + Dsui_1559 0.29 -2.2 1,626,893 + Dsui_1559 0.30 +0.4 1,626,920 - Dsui_1559 0.35 +0.4 1,626,930 + Dsui_1559 0.36 -1.9 1,626,959 + Dsui_1559 0.41 +0.4 1,627,018 + Dsui_1559 0.52 +0.4 1,627,162 + Dsui_1559 0.77 -0.6 1,627,203 + Dsui_1559 0.84 +0.4 1,627,239 + -1.2 1,627,246 - +0.4 1,627,262 + +0.4 1,627,287 + +0.4 1,627,314 - -0.6 1,627,335 + +0.4 1,627,348 + +0.4 1,627,362 + +0.4 1,627,370 - -1.6 1,627,413 + -2.6
Or see this region's nucleotide sequence