Experiment: ALP with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1528 and Dsui_1529 overlap by 14 nucleotides Dsui_1529 and Dsui_1530 are separated by 31 nucleotides Dsui_1530 and Dsui_1531 overlap by 4 nucleotides
Dsui_1528: Dsui_1528 - signal transduction histidine kinase, at 1,589,872 to 1,591,311
_1528
Dsui_1529: Dsui_1529 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 1,591,298 to 1,592,008
_1529
Dsui_1530: Dsui_1530 - hypothetical protein, at 1,592,040 to 1,592,327
_1530
Dsui_1531: Dsui_1531 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 1,592,324 to 1,594,537
_1531
Position (kb)
1592
1593 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1591.095 kb on - strand, within Dsui_1528 at 1591.168 kb on - strand at 1591.218 kb on + strand at 1591.273 kb on - strand at 1591.352 kb on - strand at 1591.401 kb on - strand at 1591.420 kb on + strand at 1591.475 kb on - strand, within Dsui_1529 at 1591.503 kb on + strand, within Dsui_1529 at 1591.726 kb on + strand, within Dsui_1529 at 1591.772 kb on + strand, within Dsui_1529 at 1591.797 kb on - strand, within Dsui_1529 at 1591.806 kb on + strand at 1591.809 kb on + strand, within Dsui_1529 at 1591.814 kb on - strand, within Dsui_1529 at 1591.824 kb on - strand, within Dsui_1529 at 1592.128 kb on + strand at 1592.216 kb on + strand, within Dsui_1530 at 1592.216 kb on + strand, within Dsui_1530 at 1592.224 kb on - strand, within Dsui_1530 at 1592.307 kb on + strand at 1592.368 kb on - strand at 1592.598 kb on + strand at 1592.712 kb on - strand, within Dsui_1531 at 1592.947 kb on + strand at 1592.982 kb on + strand, within Dsui_1531 at 1592.985 kb on - strand, within Dsui_1531 at 1593.057 kb on - strand, within Dsui_1531 at 1593.086 kb on - strand at 1593.142 kb on - strand, within Dsui_1531 at 1593.171 kb on - strand, within Dsui_1531 at 1593.203 kb on + strand at 1593.211 kb on - strand, within Dsui_1531 at 1593.265 kb on + strand, within Dsui_1531 at 1593.326 kb on - strand, within Dsui_1531
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 50 mM remove 1,591,095 - Dsui_1528 0.85 -1.0 1,591,168 - -3.2 1,591,218 + -0.6 1,591,273 - -0.6 1,591,352 - -4.3 1,591,401 - +0.4 1,591,420 + +0.4 1,591,475 - Dsui_1529 0.25 -2.4 1,591,503 + Dsui_1529 0.29 -2.2 1,591,726 + Dsui_1529 0.60 +0.4 1,591,772 + Dsui_1529 0.67 -0.6 1,591,797 - Dsui_1529 0.70 -3.9 1,591,806 + +0.4 1,591,809 + Dsui_1529 0.72 +0.4 1,591,814 - Dsui_1529 0.73 -3.9 1,591,824 - Dsui_1529 0.74 -3.6 1,592,128 + -1.2 1,592,216 + Dsui_1530 0.61 +0.4 1,592,216 + Dsui_1530 0.61 -1.2 1,592,224 - Dsui_1530 0.64 -1.9 1,592,307 + +0.4 1,592,368 - +0.4 1,592,598 + -1.2 1,592,712 - Dsui_1531 0.18 +0.4 1,592,947 + +0.4 1,592,982 + Dsui_1531 0.30 +0.4 1,592,985 - Dsui_1531 0.30 -2.9 1,593,057 - Dsui_1531 0.33 -2.4 1,593,086 - -0.6 1,593,142 - Dsui_1531 0.37 -1.9 1,593,171 - Dsui_1531 0.38 -0.6 1,593,203 + +0.4 1,593,211 - Dsui_1531 0.40 -1.2 1,593,265 + Dsui_1531 0.43 -3.2 1,593,326 - Dsui_1531 0.45 +0.4
Or see this region's nucleotide sequence