Strain Fitness in Dechlorosoma suillum PS around Dsui_1530

Experiment: ALP with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1528 and Dsui_1529 overlap by 14 nucleotidesDsui_1529 and Dsui_1530 are separated by 31 nucleotidesDsui_1530 and Dsui_1531 overlap by 4 nucleotides Dsui_1528: Dsui_1528 - signal transduction histidine kinase, at 1,589,872 to 1,591,311 _1528 Dsui_1529: Dsui_1529 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 1,591,298 to 1,592,008 _1529 Dsui_1530: Dsui_1530 - hypothetical protein, at 1,592,040 to 1,592,327 _1530 Dsui_1531: Dsui_1531 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 1,592,324 to 1,594,537 _1531 Position (kb) 1592 1593Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1591.095 kb on - strand, within Dsui_1528at 1591.168 kb on - strandat 1591.218 kb on + strandat 1591.273 kb on - strandat 1591.352 kb on - strandat 1591.401 kb on - strandat 1591.420 kb on + strandat 1591.475 kb on - strand, within Dsui_1529at 1591.503 kb on + strand, within Dsui_1529at 1591.726 kb on + strand, within Dsui_1529at 1591.772 kb on + strand, within Dsui_1529at 1591.797 kb on - strand, within Dsui_1529at 1591.806 kb on + strandat 1591.809 kb on + strand, within Dsui_1529at 1591.814 kb on - strand, within Dsui_1529at 1591.824 kb on - strand, within Dsui_1529at 1592.128 kb on + strandat 1592.216 kb on + strand, within Dsui_1530at 1592.216 kb on + strand, within Dsui_1530at 1592.224 kb on - strand, within Dsui_1530at 1592.307 kb on + strandat 1592.368 kb on - strandat 1592.598 kb on + strandat 1592.712 kb on - strand, within Dsui_1531at 1592.947 kb on + strandat 1592.982 kb on + strand, within Dsui_1531at 1592.985 kb on - strand, within Dsui_1531at 1593.057 kb on - strand, within Dsui_1531at 1593.086 kb on - strandat 1593.142 kb on - strand, within Dsui_1531at 1593.171 kb on - strand, within Dsui_1531at 1593.203 kb on + strandat 1593.211 kb on - strand, within Dsui_1531at 1593.265 kb on + strand, within Dsui_1531at 1593.326 kb on - strand, within Dsui_1531

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrate 50 mM
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1,591,095 - Dsui_1528 0.85 -1.0
1,591,168 - -3.2
1,591,218 + -0.6
1,591,273 - -0.6
1,591,352 - -4.3
1,591,401 - +0.4
1,591,420 + +0.4
1,591,475 - Dsui_1529 0.25 -2.4
1,591,503 + Dsui_1529 0.29 -2.2
1,591,726 + Dsui_1529 0.60 +0.4
1,591,772 + Dsui_1529 0.67 -0.6
1,591,797 - Dsui_1529 0.70 -3.9
1,591,806 + +0.4
1,591,809 + Dsui_1529 0.72 +0.4
1,591,814 - Dsui_1529 0.73 -3.9
1,591,824 - Dsui_1529 0.74 -3.6
1,592,128 + -1.2
1,592,216 + Dsui_1530 0.61 +0.4
1,592,216 + Dsui_1530 0.61 -1.2
1,592,224 - Dsui_1530 0.64 -1.9
1,592,307 + +0.4
1,592,368 - +0.4
1,592,598 + -1.2
1,592,712 - Dsui_1531 0.18 +0.4
1,592,947 + +0.4
1,592,982 + Dsui_1531 0.30 +0.4
1,592,985 - Dsui_1531 0.30 -2.9
1,593,057 - Dsui_1531 0.33 -2.4
1,593,086 - -0.6
1,593,142 - Dsui_1531 0.37 -1.9
1,593,171 - Dsui_1531 0.38 -0.6
1,593,203 + +0.4
1,593,211 - Dsui_1531 0.40 -1.2
1,593,265 + Dsui_1531 0.43 -3.2
1,593,326 - Dsui_1531 0.45 +0.4

Or see this region's nucleotide sequence