Strain Fitness in Dechlorosoma suillum PS around Dsui_0978

Experiment: ALP with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0977 and Dsui_0978 are separated by 87 nucleotidesDsui_0978 and Dsui_0979 are separated by 116 nucleotidesDsui_0979 and Dsui_0980 are separated by 132 nucleotides Dsui_0977: Dsui_0977 - acyl-CoA dehydrogenase, at 1,003,640 to 1,004,776 _0977 Dsui_0978: Dsui_0978 - 2-hydroxychromene-2-carboxylate isomerase, at 1,004,864 to 1,005,466 _0978 Dsui_0979: Dsui_0979 - TIGR00730 family protein, at 1,005,583 to 1,006,167 _0979 Dsui_0980: Dsui_0980 - acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta), at 1,006,300 to 1,007,907 _0980 Position (kb) 1004 1005 1006Strain fitness (log2 ratio) -2 -1 0 1at 1003.890 kb on + strand, within Dsui_0977at 1003.933 kb on - strand, within Dsui_0977at 1004.088 kb on + strand, within Dsui_0977at 1004.154 kb on + strand, within Dsui_0977at 1004.171 kb on + strand, within Dsui_0977at 1004.189 kb on + strand, within Dsui_0977at 1004.233 kb on + strand, within Dsui_0977at 1004.562 kb on + strand, within Dsui_0977at 1004.568 kb on + strand, within Dsui_0977at 1004.641 kb on + strand, within Dsui_0977at 1004.657 kb on + strand, within Dsui_0977at 1004.762 kb on - strandat 1004.778 kb on - strandat 1004.829 kb on + strandat 1004.829 kb on + strandat 1004.996 kb on - strand, within Dsui_0978at 1005.128 kb on - strand, within Dsui_0978at 1005.178 kb on + strand, within Dsui_0978at 1005.222 kb on - strand, within Dsui_0978at 1005.414 kb on - strandat 1005.540 kb on + strandat 1005.670 kb on + strand, within Dsui_0979at 1005.848 kb on + strand, within Dsui_0979at 1005.939 kb on - strand, within Dsui_0979at 1006.064 kb on + strand, within Dsui_0979at 1006.068 kb on + strand, within Dsui_0979at 1006.106 kb on - strand, within Dsui_0979at 1006.416 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrate 50 mM
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1,003,890 + Dsui_0977 0.22 +0.5
1,003,933 - Dsui_0977 0.26 -0.1
1,004,088 + Dsui_0977 0.39 -2.5
1,004,154 + Dsui_0977 0.45 +1.5
1,004,171 + Dsui_0977 0.47 -2.2
1,004,189 + Dsui_0977 0.48 -1.5
1,004,233 + Dsui_0977 0.52 -0.5
1,004,562 + Dsui_0977 0.81 -1.7
1,004,568 + Dsui_0977 0.82 -0.5
1,004,641 + Dsui_0977 0.88 -2.1
1,004,657 + Dsui_0977 0.89 +0.8
1,004,762 - +0.5
1,004,778 - +0.5
1,004,829 + -1.6
1,004,829 + +1.5
1,004,996 - Dsui_0978 0.22 +0.5
1,005,128 - Dsui_0978 0.44 -0.5
1,005,178 + Dsui_0978 0.52 -2.1
1,005,222 - Dsui_0978 0.59 -2.1
1,005,414 - -0.5
1,005,540 + +0.1
1,005,670 + Dsui_0979 0.15 -0.7
1,005,848 + Dsui_0979 0.45 -0.6
1,005,939 - Dsui_0979 0.61 +0.5
1,006,064 + Dsui_0979 0.82 -0.1
1,006,068 + Dsui_0979 0.83 -0.2
1,006,106 - Dsui_0979 0.89 +0.5
1,006,416 - -0.5

Or see this region's nucleotide sequence