Experiment: ALP with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0965 and Dsui_0966 are separated by 219 nucleotides Dsui_0966 and Dsui_0967 are separated by 98 nucleotides Dsui_0967 and Dsui_0968 are separated by 54 nucleotides
Dsui_0965: Dsui_0965 - putative membrane protein, at 990,086 to 990,778
_0965
Dsui_0966: Dsui_0966 - methyl-accepting chemotaxis protein, at 990,998 to 993,025
_0966
Dsui_0967: Dsui_0967 - hypothetical protein, at 993,124 to 993,459
_0967
Dsui_0968: Dsui_0968 - deoxyinosine 3'endonuclease (endonuclease V), at 993,514 to 994,167
_0968
Position (kb)
990
991
992
993
994 Strain fitness (log2 ratio)
-2
-1
0
1 at 990.023 kb on - strand at 990.091 kb on - strand at 990.205 kb on + strand, within Dsui_0965 at 990.216 kb on + strand, within Dsui_0965 at 990.293 kb on + strand, within Dsui_0965 at 990.365 kb on + strand, within Dsui_0965 at 990.366 kb on + strand, within Dsui_0965 at 990.366 kb on + strand, within Dsui_0965 at 990.373 kb on - strand, within Dsui_0965 at 990.428 kb on - strand, within Dsui_0965 at 990.494 kb on - strand, within Dsui_0965 at 990.494 kb on - strand at 990.494 kb on - strand, within Dsui_0965 at 990.598 kb on + strand, within Dsui_0965 at 990.606 kb on - strand, within Dsui_0965 at 990.693 kb on - strand, within Dsui_0965 at 990.722 kb on + strand at 990.723 kb on - strand at 990.741 kb on - strand at 990.867 kb on - strand at 990.880 kb on - strand at 990.941 kb on + strand at 991.298 kb on + strand, within Dsui_0966 at 991.352 kb on + strand, within Dsui_0966 at 991.352 kb on + strand, within Dsui_0966 at 991.362 kb on + strand, within Dsui_0966 at 991.365 kb on - strand, within Dsui_0966 at 991.440 kb on + strand, within Dsui_0966 at 991.440 kb on + strand, within Dsui_0966 at 991.450 kb on + strand at 991.582 kb on - strand, within Dsui_0966 at 991.588 kb on - strand at 991.713 kb on - strand, within Dsui_0966 at 991.720 kb on + strand at 991.811 kb on - strand at 991.965 kb on + strand, within Dsui_0966 at 992.013 kb on + strand at 992.014 kb on - strand at 992.148 kb on + strand, within Dsui_0966 at 992.170 kb on - strand at 992.484 kb on + strand, within Dsui_0966 at 992.492 kb on - strand at 992.585 kb on + strand, within Dsui_0966 at 993.364 kb on + strand, within Dsui_0967 at 993.372 kb on - strand, within Dsui_0967 at 993.380 kb on + strand, within Dsui_0967 at 993.405 kb on - strand, within Dsui_0967 at 993.695 kb on - strand, within Dsui_0968 at 993.789 kb on - strand, within Dsui_0968
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 50 mM remove 990,023 - -1.8 990,091 - -0.5 990,205 + Dsui_0965 0.17 -0.2 990,216 + Dsui_0965 0.19 -0.8 990,293 + Dsui_0965 0.30 +0.5 990,365 + Dsui_0965 0.40 +0.0 990,366 + Dsui_0965 0.40 -0.5 990,366 + Dsui_0965 0.40 -1.0 990,373 - Dsui_0965 0.41 -1.1 990,428 - Dsui_0965 0.49 +0.5 990,494 - Dsui_0965 0.59 -1.1 990,494 - +0.5 990,494 - Dsui_0965 0.59 -2.5 990,598 + Dsui_0965 0.74 -0.7 990,606 - Dsui_0965 0.75 -2.3 990,693 - Dsui_0965 0.88 -0.5 990,722 + -0.5 990,723 - -2.3 990,741 - -0.5 990,867 - +0.5 990,880 - +0.5 990,941 + -0.5 991,298 + Dsui_0966 0.15 -2.1 991,352 + Dsui_0966 0.17 -1.8 991,352 + Dsui_0966 0.17 -2.5 991,362 + Dsui_0966 0.18 -1.4 991,365 - Dsui_0966 0.18 -0.5 991,440 + Dsui_0966 0.22 -0.1 991,440 + Dsui_0966 0.22 -0.5 991,450 + -0.5 991,582 - Dsui_0966 0.29 +0.5 991,588 - +0.5 991,713 - Dsui_0966 0.35 -1.5 991,720 + +0.5 991,811 - +0.5 991,965 + Dsui_0966 0.48 -2.3 992,013 + -0.5 992,014 - +0.5 992,148 + Dsui_0966 0.57 -2.3 992,170 - +0.5 992,484 + Dsui_0966 0.73 -2.3 992,492 - -0.5 992,585 + Dsui_0966 0.78 -0.5 993,364 + Dsui_0967 0.71 -0.3 993,372 - Dsui_0967 0.74 +0.5 993,380 + Dsui_0967 0.76 -0.5 993,405 - Dsui_0967 0.84 -0.5 993,695 - Dsui_0968 0.28 -1.5 993,789 - Dsui_0968 0.42 -0.5
Or see this region's nucleotide sequence