Strain Fitness in Dechlorosoma suillum PS around Dsui_0966

Experiment: ALP with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0965 and Dsui_0966 are separated by 219 nucleotidesDsui_0966 and Dsui_0967 are separated by 98 nucleotidesDsui_0967 and Dsui_0968 are separated by 54 nucleotides Dsui_0965: Dsui_0965 - putative membrane protein, at 990,086 to 990,778 _0965 Dsui_0966: Dsui_0966 - methyl-accepting chemotaxis protein, at 990,998 to 993,025 _0966 Dsui_0967: Dsui_0967 - hypothetical protein, at 993,124 to 993,459 _0967 Dsui_0968: Dsui_0968 - deoxyinosine 3'endonuclease (endonuclease V), at 993,514 to 994,167 _0968 Position (kb) 990 991 992 993 994Strain fitness (log2 ratio) -2 -1 0 1at 990.023 kb on - strandat 990.091 kb on - strandat 990.205 kb on + strand, within Dsui_0965at 990.216 kb on + strand, within Dsui_0965at 990.293 kb on + strand, within Dsui_0965at 990.365 kb on + strand, within Dsui_0965at 990.366 kb on + strand, within Dsui_0965at 990.366 kb on + strand, within Dsui_0965at 990.373 kb on - strand, within Dsui_0965at 990.428 kb on - strand, within Dsui_0965at 990.494 kb on - strand, within Dsui_0965at 990.494 kb on - strandat 990.494 kb on - strand, within Dsui_0965at 990.598 kb on + strand, within Dsui_0965at 990.606 kb on - strand, within Dsui_0965at 990.693 kb on - strand, within Dsui_0965at 990.722 kb on + strandat 990.723 kb on - strandat 990.741 kb on - strandat 990.867 kb on - strandat 990.880 kb on - strandat 990.941 kb on + strandat 991.298 kb on + strand, within Dsui_0966at 991.352 kb on + strand, within Dsui_0966at 991.352 kb on + strand, within Dsui_0966at 991.362 kb on + strand, within Dsui_0966at 991.365 kb on - strand, within Dsui_0966at 991.440 kb on + strand, within Dsui_0966at 991.440 kb on + strand, within Dsui_0966at 991.450 kb on + strandat 991.582 kb on - strand, within Dsui_0966at 991.588 kb on - strandat 991.713 kb on - strand, within Dsui_0966at 991.720 kb on + strandat 991.811 kb on - strandat 991.965 kb on + strand, within Dsui_0966at 992.013 kb on + strandat 992.014 kb on - strandat 992.148 kb on + strand, within Dsui_0966at 992.170 kb on - strandat 992.484 kb on + strand, within Dsui_0966at 992.492 kb on - strandat 992.585 kb on + strand, within Dsui_0966at 993.364 kb on + strand, within Dsui_0967at 993.372 kb on - strand, within Dsui_0967at 993.380 kb on + strand, within Dsui_0967at 993.405 kb on - strand, within Dsui_0967at 993.695 kb on - strand, within Dsui_0968at 993.789 kb on - strand, within Dsui_0968

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrate 50 mM
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990,023 - -1.8
990,091 - -0.5
990,205 + Dsui_0965 0.17 -0.2
990,216 + Dsui_0965 0.19 -0.8
990,293 + Dsui_0965 0.30 +0.5
990,365 + Dsui_0965 0.40 +0.0
990,366 + Dsui_0965 0.40 -0.5
990,366 + Dsui_0965 0.40 -1.0
990,373 - Dsui_0965 0.41 -1.1
990,428 - Dsui_0965 0.49 +0.5
990,494 - Dsui_0965 0.59 -1.1
990,494 - +0.5
990,494 - Dsui_0965 0.59 -2.5
990,598 + Dsui_0965 0.74 -0.7
990,606 - Dsui_0965 0.75 -2.3
990,693 - Dsui_0965 0.88 -0.5
990,722 + -0.5
990,723 - -2.3
990,741 - -0.5
990,867 - +0.5
990,880 - +0.5
990,941 + -0.5
991,298 + Dsui_0966 0.15 -2.1
991,352 + Dsui_0966 0.17 -1.8
991,352 + Dsui_0966 0.17 -2.5
991,362 + Dsui_0966 0.18 -1.4
991,365 - Dsui_0966 0.18 -0.5
991,440 + Dsui_0966 0.22 -0.1
991,440 + Dsui_0966 0.22 -0.5
991,450 + -0.5
991,582 - Dsui_0966 0.29 +0.5
991,588 - +0.5
991,713 - Dsui_0966 0.35 -1.5
991,720 + +0.5
991,811 - +0.5
991,965 + Dsui_0966 0.48 -2.3
992,013 + -0.5
992,014 - +0.5
992,148 + Dsui_0966 0.57 -2.3
992,170 - +0.5
992,484 + Dsui_0966 0.73 -2.3
992,492 - -0.5
992,585 + Dsui_0966 0.78 -0.5
993,364 + Dsui_0967 0.71 -0.3
993,372 - Dsui_0967 0.74 +0.5
993,380 + Dsui_0967 0.76 -0.5
993,405 - Dsui_0967 0.84 -0.5
993,695 - Dsui_0968 0.28 -1.5
993,789 - Dsui_0968 0.42 -0.5

Or see this region's nucleotide sequence