Experiment: ALP with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0957 and Dsui_0958 are separated by 64 nucleotides Dsui_0958 and Dsui_0959 are separated by 212 nucleotides Dsui_0959 and Dsui_0960 are separated by 9 nucleotides
Dsui_0957: Dsui_0957 - nitrogenase molybdenum-iron protein beta chain, at 983,306 to 984,826
_0957
Dsui_0958: Dsui_0958 - ferredoxin, at 984,891 to 985,238
_0958
Dsui_0959: Dsui_0959 - hypothetical protein, at 985,451 to 985,690
_0959
Dsui_0960: Dsui_0960 - putative permease, at 985,700 to 986,755
_0960
Position (kb) 985
986 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 984.531 kb on - strand at 984.576 kb on - strand, within Dsui_0957 at 984.579 kb on + strand at 984.731 kb on - strand at 984.738 kb on + strand at 984.738 kb on + strand at 984.857 kb on - strand at 984.913 kb on + strand at 984.931 kb on - strand, within Dsui_0958 at 984.967 kb on - strand, within Dsui_0958 at 985.068 kb on + strand, within Dsui_0958 at 985.073 kb on + strand, within Dsui_0958 at 985.327 kb on + strand at 985.487 kb on - strand, within Dsui_0959 at 985.739 kb on + strand at 985.844 kb on + strand at 985.844 kb on + strand, within Dsui_0960 at 985.849 kb on + strand, within Dsui_0960 at 985.856 kb on + strand, within Dsui_0960 at 985.869 kb on - strand, within Dsui_0960 at 985.932 kb on + strand, within Dsui_0960 at 986.099 kb on + strand at 986.165 kb on + strand, within Dsui_0960 at 986.190 kb on + strand, within Dsui_0960 at 986.237 kb on + strand, within Dsui_0960 at 986.271 kb on - strand, within Dsui_0960 at 986.294 kb on - strand, within Dsui_0960 at 986.438 kb on + strand, within Dsui_0960 at 986.593 kb on + strand, within Dsui_0960 at 986.611 kb on + strand, within Dsui_0960
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 50 mM remove 984,531 - -0.5 984,576 - Dsui_0957 0.83 +0.0 984,579 + +0.5 984,731 - +0.5 984,738 + +0.5 984,738 + -1.8 984,857 - -3.1 984,913 + +0.5 984,931 - Dsui_0958 0.11 -1.8 984,967 - Dsui_0958 0.22 -1.8 985,068 + Dsui_0958 0.51 -1.1 985,073 + Dsui_0958 0.52 -1.5 985,327 + -0.5 985,487 - Dsui_0959 0.15 +0.5 985,739 + -1.5 985,844 + +0.5 985,844 + Dsui_0960 0.14 -0.5 985,849 + Dsui_0960 0.14 -1.5 985,856 + Dsui_0960 0.15 -0.5 985,869 - Dsui_0960 0.16 +0.5 985,932 + Dsui_0960 0.22 -1.1 986,099 + +0.5 986,165 + Dsui_0960 0.44 +0.5 986,190 + Dsui_0960 0.46 -1.1 986,237 + Dsui_0960 0.51 +0.5 986,271 - Dsui_0960 0.54 -1.1 986,294 - Dsui_0960 0.56 -2.5 986,438 + Dsui_0960 0.70 -1.1 986,593 + Dsui_0960 0.85 -0.5 986,611 + Dsui_0960 0.86 +0.5
Or see this region's nucleotide sequence