Strain Fitness in Dechlorosoma suillum PS around Dsui_0955

Experiment: ALP with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0954 and Dsui_0955 are separated by 381 nucleotidesDsui_0955 and Dsui_0956 are separated by 108 nucleotides Dsui_0954: Dsui_0954 - Dinitrogenase reductase ADP-ribosyltransferase (DRAT), at 979,514 to 980,365 _0954 Dsui_0955: Dsui_0955 - nitrogenase iron protein, at 980,747 to 981,622 _0955 Dsui_0956: Dsui_0956 - nitrogenase molybdenum-iron protein alpha chain, at 981,731 to 983,173 _0956 Position (kb) 980 981 982Strain fitness (log2 ratio) -3 -2 -1 0 1at 979.837 kb on + strandat 979.846 kb on + strand, within Dsui_0954at 979.956 kb on + strandat 980.077 kb on - strand, within Dsui_0954at 980.163 kb on + strand, within Dsui_0954at 980.242 kb on - strand, within Dsui_0954at 980.522 kb on + strandat 980.675 kb on - strandat 980.686 kb on - strandat 980.688 kb on + strandat 980.694 kb on + strandat 980.838 kb on - strandat 980.917 kb on - strand, within Dsui_0955at 981.100 kb on - strandat 981.249 kb on - strand, within Dsui_0955at 981.249 kb on - strand, within Dsui_0955at 981.303 kb on - strandat 981.368 kb on - strand, within Dsui_0955at 981.455 kb on - strand, within Dsui_0955at 981.466 kb on + strand, within Dsui_0955at 981.496 kb on - strand, within Dsui_0955at 981.501 kb on - strandat 981.604 kb on + strandat 981.735 kb on + strandat 981.774 kb on + strandat 981.782 kb on - strandat 981.836 kb on - strandat 981.836 kb on - strandat 981.879 kb on - strand, within Dsui_0956at 981.965 kb on + strand, within Dsui_0956at 982.216 kb on + strand, within Dsui_0956at 982.351 kb on + strand, within Dsui_0956at 982.599 kb on + strand, within Dsui_0956at 982.613 kb on + strand, within Dsui_0956

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrate 50 mM
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979,837 + -0.5
979,846 + Dsui_0954 0.39 -1.8
979,956 + +0.5
980,077 - Dsui_0954 0.66 -0.5
980,163 + Dsui_0954 0.76 -1.5
980,242 - Dsui_0954 0.85 -0.5
980,522 + -0.5
980,675 - -2.1
980,686 - +0.6
980,688 + +0.5
980,694 + -3.1
980,838 - +0.5
980,917 - Dsui_0955 0.19 -0.5
981,100 - +0.5
981,249 - Dsui_0955 0.57 -1.1
981,249 - Dsui_0955 0.57 -1.1
981,303 - +0.5
981,368 - Dsui_0955 0.71 -1.5
981,455 - Dsui_0955 0.81 -2.1
981,466 + Dsui_0955 0.82 -0.5
981,496 - Dsui_0955 0.86 +0.5
981,501 - +0.5
981,604 + +0.5
981,735 + +0.5
981,774 + -0.5
981,782 - +0.5
981,836 - +0.5
981,836 - +0.5
981,879 - Dsui_0956 0.10 -2.3
981,965 + Dsui_0956 0.16 -1.1
982,216 + Dsui_0956 0.34 +0.5
982,351 + Dsui_0956 0.43 +0.5
982,599 + Dsui_0956 0.60 +0.5
982,613 + Dsui_0956 0.61 +0.5

Or see this region's nucleotide sequence