Strain Fitness in Dechlorosoma suillum PS around Dsui_0936

Experiment: ALP with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0934 and Dsui_0935 are separated by 107 nucleotidesDsui_0935 and Dsui_0936 are separated by 129 nucleotidesDsui_0936 and Dsui_0937 are separated by 99 nucleotidesDsui_0937 and Dsui_0938 are separated by 156 nucleotides Dsui_0934: Dsui_0934 - hypothetical protein, at 963,566 to 963,862 _0934 Dsui_0935: Dsui_0935 - cytochrome c5, at 963,970 to 964,413 _0935 Dsui_0936: Dsui_0936 - tRNA-Arg, at 964,543 to 964,619 _0936 Dsui_0937: Dsui_0937 - hypothetical protein, at 964,719 to 965,039 _0937 Dsui_0938: Dsui_0938 - HD-GYP domain-containing protein, at 965,196 to 966,275 _0938 Position (kb) 964 965Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 963.952 kb on + strandat 963.971 kb on + strandat 964.013 kb on - strandat 964.026 kb on + strand, within Dsui_0935at 964.077 kb on + strand, within Dsui_0935at 964.091 kb on - strand, within Dsui_0935at 964.132 kb on + strand, within Dsui_0935at 964.316 kb on + strandat 964.404 kb on + strandat 964.415 kb on - strandat 964.437 kb on + strandat 964.449 kb on - strandat 964.638 kb on + strandat 964.646 kb on - strandat 964.647 kb on - strandat 964.668 kb on + strandat 964.768 kb on + strand, within Dsui_0937at 964.779 kb on + strand, within Dsui_0937at 964.788 kb on - strand, within Dsui_0937at 964.838 kb on + strandat 964.908 kb on + strand, within Dsui_0937at 964.983 kb on - strand, within Dsui_0937at 964.994 kb on - strand, within Dsui_0937at 964.994 kb on - strand, within Dsui_0937at 965.026 kb on - strandat 965.049 kb on - strandat 965.056 kb on + strandat 965.074 kb on - strandat 965.147 kb on + strandat 965.155 kb on - strandat 965.178 kb on + strandat 965.187 kb on - strandat 965.194 kb on + strandat 965.320 kb on - strandat 965.400 kb on - strand, within Dsui_0938at 965.404 kb on + strand, within Dsui_0938at 965.459 kb on + strand, within Dsui_0938at 965.482 kb on - strand, within Dsui_0938at 965.486 kb on - strand, within Dsui_0938

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrate 50 mM
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963,952 + -0.5
963,971 + -0.5
964,013 - +0.0
964,026 + Dsui_0935 0.13 -1.1
964,077 + Dsui_0935 0.24 -2.8
964,091 - Dsui_0935 0.27 -0.0
964,132 + Dsui_0935 0.36 -0.1
964,316 + +2.1
964,404 + +0.5
964,415 - +0.1
964,437 + -1.1
964,449 - +0.2
964,638 + +0.1
964,646 - -0.5
964,647 - -0.5
964,668 + -0.6
964,768 + Dsui_0937 0.15 -0.2
964,779 + Dsui_0937 0.19 +0.5
964,788 - Dsui_0937 0.21 -0.0
964,838 + -0.1
964,908 + Dsui_0937 0.59 -2.3
964,983 - Dsui_0937 0.82 +0.5
964,994 - Dsui_0937 0.86 -0.7
964,994 - Dsui_0937 0.86 -0.8
965,026 - +1.1
965,049 - -0.2
965,056 + +0.5
965,074 - -0.2
965,147 + -2.1
965,155 - -0.5
965,178 + +0.4
965,187 - +0.5
965,194 + +0.0
965,320 - -0.5
965,400 - Dsui_0938 0.19 -1.5
965,404 + Dsui_0938 0.19 -0.4
965,459 + Dsui_0938 0.24 +0.2
965,482 - Dsui_0938 0.26 +0.5
965,486 - Dsui_0938 0.27 +0.5

Or see this region's nucleotide sequence