Experiment: ALP with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0878 and Dsui_0879 are separated by 14 nucleotides Dsui_0879 and Dsui_0880 are separated by 157 nucleotides Dsui_0880 and Dsui_0881 are separated by 21 nucleotides Dsui_0881 and Dsui_0882 are separated by 189 nucleotides
Dsui_0878: Dsui_0878 - heme/copper-type cytochrome/quinol oxidase, subunit 3, at 891,186 to 891,821
_0878
Dsui_0879: Dsui_0879 - hypothetical protein, at 891,836 to 892,144
_0879
Dsui_0880: Dsui_0880 - Bacterial regulatory protein, Fis family, at 892,302 to 892,619
_0880
Dsui_0881: Dsui_0881 - cAMP-binding protein, at 892,641 to 893,348
_0881
Dsui_0882: Dsui_0882 - nitrous oxide reductase, at 893,538 to 895,835
_0882
Position (kb) 892
893
894 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 891.653 kb on + strand, within Dsui_0878 at 891.661 kb on + strand, within Dsui_0878 at 891.662 kb on - strand, within Dsui_0878 at 891.769 kb on + strand at 891.787 kb on - strand at 891.803 kb on + strand at 891.806 kb on - strand at 891.815 kb on + strand at 891.816 kb on + strand at 891.818 kb on - strand at 891.847 kb on + strand at 891.905 kb on + strand, within Dsui_0879 at 891.913 kb on - strand at 891.923 kb on - strand at 891.988 kb on + strand, within Dsui_0879 at 892.073 kb on + strand, within Dsui_0879 at 892.145 kb on - strand at 892.260 kb on + strand at 892.265 kb on + strand at 892.273 kb on - strand at 892.278 kb on + strand at 892.278 kb on + strand at 892.328 kb on + strand at 892.330 kb on - strand at 892.336 kb on - strand at 892.341 kb on - strand, within Dsui_0880 at 892.403 kb on - strand, within Dsui_0880 at 892.467 kb on + strand, within Dsui_0880 at 892.481 kb on + strand, within Dsui_0880 at 892.497 kb on + strand, within Dsui_0880 at 892.497 kb on - strand, within Dsui_0880 at 892.523 kb on + strand at 892.575 kb on - strand, within Dsui_0880 at 892.590 kb on + strand at 892.686 kb on - strand at 892.693 kb on + strand at 892.719 kb on + strand, within Dsui_0881 at 892.743 kb on + strand, within Dsui_0881 at 892.751 kb on - strand, within Dsui_0881 at 892.758 kb on + strand, within Dsui_0881 at 892.771 kb on - strand at 892.787 kb on - strand, within Dsui_0881 at 892.821 kb on - strand, within Dsui_0881 at 892.876 kb on - strand, within Dsui_0881 at 892.900 kb on - strand, within Dsui_0881 at 892.921 kb on + strand, within Dsui_0881 at 892.929 kb on + strand, within Dsui_0881 at 893.065 kb on - strand, within Dsui_0881 at 893.147 kb on + strand, within Dsui_0881 at 893.155 kb on - strand, within Dsui_0881 at 893.171 kb on + strand, within Dsui_0881 at 893.227 kb on + strand, within Dsui_0881 at 893.252 kb on + strand, within Dsui_0881 at 893.260 kb on - strand, within Dsui_0881 at 893.284 kb on - strand at 893.291 kb on - strand at 893.323 kb on + strand at 893.331 kb on - strand at 893.342 kb on + strand at 893.343 kb on + strand at 893.350 kb on - strand at 893.351 kb on - strand at 893.351 kb on - strand at 893.395 kb on - strand at 893.486 kb on + strand at 893.526 kb on + strand at 893.580 kb on - strand at 893.645 kb on - strand at 893.694 kb on - strand at 893.724 kb on + strand at 893.854 kb on - strand, within Dsui_0882 at 893.867 kb on + strand, within Dsui_0882 at 894.074 kb on + strand at 894.074 kb on + strand, within Dsui_0882 at 894.082 kb on - strand at 894.082 kb on - strand at 894.142 kb on + strand, within Dsui_0882 at 894.150 kb on - strand, within Dsui_0882 at 894.160 kb on - strand, within Dsui_0882
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 50 mM remove 891,653 + Dsui_0878 0.73 -0.6 891,661 + Dsui_0878 0.75 -3.9 891,662 - Dsui_0878 0.75 -1.6 891,769 + -0.6 891,787 - -0.6 891,803 + -1.1 891,806 - +0.4 891,815 + +0.4 891,816 + -0.6 891,818 - +0.4 891,847 + +0.4 891,905 + Dsui_0879 0.22 -0.6 891,913 - +0.4 891,923 - +0.4 891,988 + Dsui_0879 0.49 -1.1 892,073 + Dsui_0879 0.77 +0.4 892,145 - -1.6 892,260 + -0.6 892,265 + -2.6 892,273 - -1.6 892,278 + +0.4 892,278 + +0.4 892,328 + -0.6 892,330 - +0.4 892,336 - +0.4 892,341 - Dsui_0880 0.12 -1.9 892,403 - Dsui_0880 0.32 +0.4 892,467 + Dsui_0880 0.52 +0.4 892,481 + Dsui_0880 0.56 -0.6 892,497 + Dsui_0880 0.61 -2.7 892,497 - Dsui_0880 0.61 -2.1 892,523 + +0.4 892,575 - Dsui_0880 0.86 -0.6 892,590 + +0.4 892,686 - -1.1 892,693 + -2.1 892,719 + Dsui_0881 0.11 +0.4 892,743 + Dsui_0881 0.14 -1.1 892,751 - Dsui_0881 0.16 -0.5 892,758 + Dsui_0881 0.17 -1.9 892,771 - +0.5 892,787 - Dsui_0881 0.21 -1.9 892,821 - Dsui_0881 0.25 +0.5 892,876 - Dsui_0881 0.33 -0.5 892,900 - Dsui_0881 0.37 -1.1 892,921 + Dsui_0881 0.40 -1.9 892,929 + Dsui_0881 0.41 -0.5 893,065 - Dsui_0881 0.60 -0.5 893,147 + Dsui_0881 0.71 -1.5 893,155 - Dsui_0881 0.73 -1.9 893,171 + Dsui_0881 0.75 -1.1 893,227 + Dsui_0881 0.83 +0.5 893,252 + Dsui_0881 0.86 -1.9 893,260 - Dsui_0881 0.87 +0.5 893,284 - +0.5 893,291 - +0.5 893,323 + -0.5 893,331 - -0.5 893,342 + -1.9 893,343 + -0.5 893,350 - +0.5 893,351 - +0.5 893,351 - -1.5 893,395 - -1.1 893,486 + +0.5 893,526 + -0.5 893,580 - -0.5 893,645 - -0.5 893,694 - -2.1 893,724 + -1.1 893,854 - Dsui_0882 0.14 +0.5 893,867 + Dsui_0882 0.14 -0.5 894,074 + +0.5 894,074 + Dsui_0882 0.23 +0.5 894,082 - +0.5 894,082 - +0.5 894,142 + Dsui_0882 0.26 -0.5 894,150 - Dsui_0882 0.27 -0.5 894,160 - Dsui_0882 0.27 -1.9
Or see this region's nucleotide sequence