Strain Fitness in Dechlorosoma suillum PS around Dsui_0819

Experiment: ALP with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0818 and Dsui_0819 are separated by 9 nucleotidesDsui_0819 and Dsui_0820 are separated by 10 nucleotidesDsui_0820 and Dsui_0821 are separated by 189 nucleotides Dsui_0818: Dsui_0818 - LysM domain-containing protein, at 829,284 to 830,339 _0818 Dsui_0819: Dsui_0819 - DNA protecting protein DprA, at 830,349 to 831,467 _0819 Dsui_0820: Dsui_0820 - hypothetical protein, at 831,478 to 831,966 _0820 Dsui_0821: Dsui_0821 - DNA topoisomerase III, at 832,156 to 834,741 _0821 Position (kb) 830 831 832Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 829.382 kb on - strandat 829.404 kb on - strand, within Dsui_0818at 829.438 kb on - strand, within Dsui_0818at 829.473 kb on + strand, within Dsui_0818at 829.473 kb on + strand, within Dsui_0818at 829.481 kb on - strand, within Dsui_0818at 829.481 kb on - strand, within Dsui_0818at 829.574 kb on + strand, within Dsui_0818at 829.620 kb on + strand, within Dsui_0818at 829.628 kb on + strand, within Dsui_0818at 829.628 kb on - strand, within Dsui_0818at 829.677 kb on - strand, within Dsui_0818at 829.681 kb on - strand, within Dsui_0818at 829.696 kb on - strand, within Dsui_0818at 829.702 kb on - strand, within Dsui_0818at 829.709 kb on + strand, within Dsui_0818at 829.768 kb on - strand, within Dsui_0818at 829.792 kb on - strand, within Dsui_0818at 829.792 kb on - strand, within Dsui_0818at 829.792 kb on - strand, within Dsui_0818at 829.792 kb on - strand, within Dsui_0818at 829.806 kb on - strand, within Dsui_0818at 829.806 kb on - strand, within Dsui_0818at 829.852 kb on - strand, within Dsui_0818at 829.852 kb on - strand, within Dsui_0818at 829.863 kb on - strand, within Dsui_0818at 829.864 kb on + strand, within Dsui_0818at 829.880 kb on - strand, within Dsui_0818at 829.880 kb on - strand, within Dsui_0818at 829.887 kb on + strand, within Dsui_0818at 829.911 kb on - strand, within Dsui_0818at 829.911 kb on - strand, within Dsui_0818at 830.014 kb on + strand, within Dsui_0818at 830.015 kb on - strand, within Dsui_0818at 830.017 kb on - strand, within Dsui_0818at 830.043 kb on + strand, within Dsui_0818at 830.050 kb on - strand, within Dsui_0818at 830.064 kb on + strand, within Dsui_0818at 830.064 kb on + strand, within Dsui_0818at 830.072 kb on - strand, within Dsui_0818at 830.103 kb on - strand, within Dsui_0818at 830.103 kb on - strand, within Dsui_0818at 830.103 kb on - strand, within Dsui_0818at 830.111 kb on + strand, within Dsui_0818at 830.111 kb on + strand, within Dsui_0818at 830.111 kb on + strand, within Dsui_0818at 830.147 kb on + strand, within Dsui_0818at 830.147 kb on + strand, within Dsui_0818at 830.155 kb on - strand, within Dsui_0818at 830.175 kb on + strand, within Dsui_0818at 830.175 kb on + strand, within Dsui_0818at 830.175 kb on - strand, within Dsui_0818at 830.176 kb on + strand, within Dsui_0818at 830.203 kb on + strand, within Dsui_0818at 830.203 kb on + strand, within Dsui_0818at 830.213 kb on + strand, within Dsui_0818at 830.221 kb on - strand, within Dsui_0818at 830.234 kb on - strandat 830.286 kb on - strandat 830.298 kb on + strandat 830.309 kb on + strandat 830.364 kb on + strandat 830.376 kb on - strandat 830.453 kb on + strandat 830.461 kb on - strand, within Dsui_0819at 830.500 kb on + strand, within Dsui_0819at 830.543 kb on - strand, within Dsui_0819at 830.546 kb on + strand, within Dsui_0819at 830.547 kb on + strand, within Dsui_0819at 830.555 kb on - strand, within Dsui_0819at 830.555 kb on - strand, within Dsui_0819at 830.555 kb on - strand, within Dsui_0819at 830.581 kb on + strand, within Dsui_0819at 830.595 kb on + strand, within Dsui_0819at 830.603 kb on - strand, within Dsui_0819at 830.605 kb on + strand, within Dsui_0819at 830.634 kb on - strand, within Dsui_0819at 830.645 kb on + strand, within Dsui_0819at 830.653 kb on - strand, within Dsui_0819at 830.658 kb on - strand, within Dsui_0819at 830.662 kb on + strand, within Dsui_0819at 830.662 kb on + strand, within Dsui_0819at 830.685 kb on + strand, within Dsui_0819at 830.688 kb on - strand, within Dsui_0819at 830.688 kb on - strand, within Dsui_0819at 830.693 kb on - strand, within Dsui_0819at 830.693 kb on - strand, within Dsui_0819at 830.693 kb on - strand, within Dsui_0819at 830.693 kb on - strand, within Dsui_0819at 830.718 kb on + strand, within Dsui_0819at 830.726 kb on - strand, within Dsui_0819at 830.733 kb on - strand, within Dsui_0819at 830.733 kb on - strand, within Dsui_0819at 830.771 kb on - strand, within Dsui_0819at 830.801 kb on - strand, within Dsui_0819at 830.817 kb on - strand, within Dsui_0819at 830.858 kb on + strand, within Dsui_0819at 830.879 kb on + strand, within Dsui_0819at 830.879 kb on + strand, within Dsui_0819at 830.887 kb on - strand, within Dsui_0819at 830.929 kb on + strand, within Dsui_0819at 830.962 kb on - strand, within Dsui_0819at 831.017 kb on + strand, within Dsui_0819at 831.019 kb on - strand, within Dsui_0819at 831.020 kb on - strand, within Dsui_0819at 831.020 kb on - strand, within Dsui_0819at 831.025 kb on - strand, within Dsui_0819at 831.029 kb on + strand, within Dsui_0819at 831.088 kb on + strand, within Dsui_0819at 831.112 kb on + strand, within Dsui_0819at 831.171 kb on - strand, within Dsui_0819at 831.183 kb on + strand, within Dsui_0819at 831.330 kb on - strand, within Dsui_0819at 831.330 kb on - strand, within Dsui_0819at 831.330 kb on - strand, within Dsui_0819at 831.332 kb on + strand, within Dsui_0819at 831.363 kb on + strandat 831.363 kb on + strandat 831.371 kb on - strandat 831.416 kb on + strandat 831.427 kb on + strandat 831.471 kb on - strandat 831.471 kb on - strandat 831.471 kb on - strandat 831.535 kb on - strand, within Dsui_0820at 831.587 kb on + strand, within Dsui_0820at 831.619 kb on + strand, within Dsui_0820at 831.645 kb on + strand, within Dsui_0820at 831.652 kb on - strand, within Dsui_0820at 831.653 kb on + strand, within Dsui_0820at 831.716 kb on - strand, within Dsui_0820at 831.767 kb on + strand, within Dsui_0820at 831.775 kb on - strand, within Dsui_0820at 831.777 kb on + strand, within Dsui_0820at 831.785 kb on - strand, within Dsui_0820at 831.797 kb on + strand, within Dsui_0820at 831.819 kb on - strand, within Dsui_0820at 831.822 kb on + strand, within Dsui_0820at 831.860 kb on + strand, within Dsui_0820at 831.861 kb on + strand, within Dsui_0820at 831.914 kb on + strand, within Dsui_0820at 832.013 kb on + strandat 832.049 kb on + strandat 832.055 kb on + strandat 832.064 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrate 50 mM
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829,382 - +0.5
829,404 - Dsui_0818 0.11 +0.5
829,438 - Dsui_0818 0.15 +0.5
829,473 + Dsui_0818 0.18 +0.7
829,473 + Dsui_0818 0.18 -0.7
829,481 - Dsui_0818 0.19 -1.1
829,481 - Dsui_0818 0.19 +0.5
829,574 + Dsui_0818 0.27 +0.2
829,620 + Dsui_0818 0.32 -0.2
829,628 + Dsui_0818 0.33 +0.1
829,628 - Dsui_0818 0.33 +1.5
829,677 - Dsui_0818 0.37 -3.3
829,681 - Dsui_0818 0.38 -1.5
829,696 - Dsui_0818 0.39 -1.5
829,702 - Dsui_0818 0.40 -0.5
829,709 + Dsui_0818 0.40 +0.1
829,768 - Dsui_0818 0.46 +0.5
829,792 - Dsui_0818 0.48 +0.5
829,792 - Dsui_0818 0.48 -0.5
829,792 - Dsui_0818 0.48 -0.5
829,792 - Dsui_0818 0.48 +0.5
829,806 - Dsui_0818 0.49 +0.5
829,806 - Dsui_0818 0.49 +0.5
829,852 - Dsui_0818 0.54 +0.5
829,852 - Dsui_0818 0.54 -0.8
829,863 - Dsui_0818 0.55 -0.8
829,864 + Dsui_0818 0.55 +0.4
829,880 - Dsui_0818 0.56 +1.5
829,880 - Dsui_0818 0.56 -0.5
829,887 + Dsui_0818 0.57 +0.3
829,911 - Dsui_0818 0.59 -0.7
829,911 - Dsui_0818 0.59 -2.1
830,014 + Dsui_0818 0.69 +0.1
830,015 - Dsui_0818 0.69 -0.5
830,017 - Dsui_0818 0.69 -0.5
830,043 + Dsui_0818 0.72 +0.3
830,050 - Dsui_0818 0.73 -2.5
830,064 + Dsui_0818 0.74 -0.1
830,064 + Dsui_0818 0.74 -0.0
830,072 - Dsui_0818 0.75 +0.5
830,103 - Dsui_0818 0.78 -1.5
830,103 - Dsui_0818 0.78 +0.1
830,103 - Dsui_0818 0.78 -1.4
830,111 + Dsui_0818 0.78 +0.0
830,111 + Dsui_0818 0.78 -0.1
830,111 + Dsui_0818 0.78 +0.0
830,147 + Dsui_0818 0.82 -0.3
830,147 + Dsui_0818 0.82 +0.5
830,155 - Dsui_0818 0.82 -1.5
830,175 + Dsui_0818 0.84 +0.0
830,175 + Dsui_0818 0.84 +0.1
830,175 - Dsui_0818 0.84 +0.5
830,176 + Dsui_0818 0.84 -0.1
830,203 + Dsui_0818 0.87 +0.9
830,203 + Dsui_0818 0.87 -0.6
830,213 + Dsui_0818 0.88 +0.2
830,221 - Dsui_0818 0.89 -0.5
830,234 - -1.1
830,286 - +0.5
830,298 + -0.0
830,309 + -0.9
830,364 + +0.2
830,376 - +0.5
830,453 + -0.0
830,461 - Dsui_0819 0.10 -0.5
830,500 + Dsui_0819 0.13 -1.1
830,543 - Dsui_0819 0.17 -3.1
830,546 + Dsui_0819 0.18 -0.1
830,547 + Dsui_0819 0.18 +0.1
830,555 - Dsui_0819 0.18 -2.3
830,555 - Dsui_0819 0.18 -1.8
830,555 - Dsui_0819 0.18 -1.8
830,581 + Dsui_0819 0.21 +3.1
830,595 + Dsui_0819 0.22 -0.4
830,603 - Dsui_0819 0.23 -1.8
830,605 + Dsui_0819 0.23 +0.2
830,634 - Dsui_0819 0.25 -1.5
830,645 + Dsui_0819 0.26 -0.1
830,653 - Dsui_0819 0.27 +1.5
830,658 - Dsui_0819 0.28 -0.5
830,662 + Dsui_0819 0.28 -0.2
830,662 + Dsui_0819 0.28 +0.0
830,685 + Dsui_0819 0.30 +0.0
830,688 - Dsui_0819 0.30 -0.4
830,688 - Dsui_0819 0.30 +0.5
830,693 - Dsui_0819 0.31 -3.3
830,693 - Dsui_0819 0.31 -1.5
830,693 - Dsui_0819 0.31 +0.5
830,693 - Dsui_0819 0.31 -2.3
830,718 + Dsui_0819 0.33 -0.4
830,726 - Dsui_0819 0.34 -1.5
830,733 - Dsui_0819 0.34 -1.1
830,733 - Dsui_0819 0.34 -0.5
830,771 - Dsui_0819 0.38 -1.5
830,801 - Dsui_0819 0.40 -0.3
830,817 - Dsui_0819 0.42 -1.5
830,858 + Dsui_0819 0.45 -0.3
830,879 + Dsui_0819 0.47 -0.0
830,879 + Dsui_0819 0.47 -1.6
830,887 - Dsui_0819 0.48 -2.0
830,929 + Dsui_0819 0.52 -0.8
830,962 - Dsui_0819 0.55 -0.5
831,017 + Dsui_0819 0.60 +0.1
831,019 - Dsui_0819 0.60 -3.8
831,020 - Dsui_0819 0.60 -0.5
831,020 - Dsui_0819 0.60 -1.1
831,025 - Dsui_0819 0.60 -2.3
831,029 + Dsui_0819 0.61 -0.4
831,088 + Dsui_0819 0.66 -0.7
831,112 + Dsui_0819 0.68 -0.8
831,171 - Dsui_0819 0.73 -1.1
831,183 + Dsui_0819 0.75 +0.5
831,330 - Dsui_0819 0.88 +1.5
831,330 - Dsui_0819 0.88 -1.8
831,330 - Dsui_0819 0.88 -0.5
831,332 + Dsui_0819 0.88 +0.5
831,363 + -1.1
831,363 + +0.5
831,371 - -1.8
831,416 + -0.0
831,427 + -0.1
831,471 - +0.9
831,471 - -1.0
831,471 - +0.1
831,535 - Dsui_0820 0.12 -3.2
831,587 + Dsui_0820 0.22 +0.1
831,619 + Dsui_0820 0.29 +0.2
831,645 + Dsui_0820 0.34 +0.2
831,652 - Dsui_0820 0.36 -0.7
831,653 + Dsui_0820 0.36 +0.2
831,716 - Dsui_0820 0.49 -0.5
831,767 + Dsui_0820 0.59 -0.0
831,775 - Dsui_0820 0.61 -0.1
831,777 + Dsui_0820 0.61 +0.2
831,785 - Dsui_0820 0.63 -2.3
831,797 + Dsui_0820 0.65 +0.2
831,819 - Dsui_0820 0.70 -2.3
831,822 + Dsui_0820 0.70 -0.1
831,860 + Dsui_0820 0.78 +0.1
831,861 + Dsui_0820 0.78 +0.1
831,914 + Dsui_0820 0.89 +0.2
832,013 + +0.4
832,049 + +0.0
832,055 + +0.1
832,064 + +0.5

Or see this region's nucleotide sequence