Experiment: ALP with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0814 and Dsui_0815 are separated by 90 nucleotides Dsui_0815 and Dsui_0816 are separated by 57 nucleotides Dsui_0816 and Dsui_0817 are separated by 55 nucleotides Dsui_0817 and Dsui_0818 are separated by 117 nucleotides
Dsui_0814: Dsui_0814 - S1/P1 Nuclease, at 825,764 to 826,687
_0814
Dsui_0815: Dsui_0815 - Zn-dependent protease with chaperone function, at 826,778 to 827,623
_0815
Dsui_0816: Dsui_0816 - methionyl-tRNA formyltransferase, at 827,681 to 828,607
_0816
Dsui_0817: Dsui_0817 - peptide deformylase, at 828,663 to 829,166
_0817
Dsui_0818: Dsui_0818 - LysM domain-containing protein, at 829,284 to 830,339
_0818
Position (kb) 827
828
829 Strain fitness (log2 ratio) -2
-1
0
1 at 826.699 kb on + strand at 826.699 kb on + strand at 826.707 kb on - strand at 826.707 kb on - strand at 826.707 kb on - strand at 826.753 kb on - strand at 826.854 kb on + strand at 826.854 kb on + strand at 826.862 kb on - strand at 826.926 kb on + strand, within Dsui_0815 at 826.928 kb on - strand, within Dsui_0815 at 826.952 kb on - strand, within Dsui_0815 at 826.952 kb on - strand, within Dsui_0815 at 826.952 kb on - strand, within Dsui_0815 at 826.957 kb on - strand, within Dsui_0815 at 826.976 kb on - strand, within Dsui_0815 at 826.980 kb on + strand, within Dsui_0815 at 827.015 kb on - strand, within Dsui_0815 at 827.135 kb on - strand, within Dsui_0815 at 827.155 kb on - strand, within Dsui_0815 at 827.232 kb on - strand, within Dsui_0815 at 827.259 kb on - strand, within Dsui_0815 at 827.308 kb on - strand, within Dsui_0815 at 827.328 kb on + strand, within Dsui_0815 at 827.352 kb on + strand, within Dsui_0815 at 827.352 kb on + strand, within Dsui_0815 at 827.363 kb on + strand, within Dsui_0815 at 827.363 kb on + strand, within Dsui_0815 at 827.409 kb on - strand, within Dsui_0815 at 827.413 kb on - strand, within Dsui_0815 at 827.419 kb on - strand, within Dsui_0815 at 827.450 kb on + strand, within Dsui_0815 at 827.461 kb on + strand, within Dsui_0815 at 827.507 kb on + strand, within Dsui_0815 at 827.508 kb on + strand, within Dsui_0815 at 827.508 kb on + strand, within Dsui_0815 at 827.531 kb on + strand, within Dsui_0815 at 827.531 kb on + strand, within Dsui_0815 at 827.561 kb on - strand at 827.596 kb on + strand at 827.620 kb on - strand at 827.623 kb on + strand at 827.623 kb on + strand at 827.630 kb on + strand at 827.631 kb on - strand at 827.709 kb on + strand at 827.709 kb on + strand at 827.717 kb on - strand at 828.639 kb on + strand at 828.639 kb on + strand at 828.639 kb on + strand at 828.639 kb on - strand at 828.639 kb on - strand at 828.639 kb on - strand at 828.644 kb on + strand at 828.644 kb on - strand at 828.647 kb on - strand at 828.647 kb on - strand at 828.652 kb on - strand at 829.151 kb on - strand at 829.155 kb on + strand at 829.163 kb on - strand at 829.189 kb on + strand at 829.225 kb on + strand at 829.225 kb on + strand at 829.232 kb on + strand at 829.232 kb on + strand at 829.232 kb on + strand at 829.232 kb on + strand at 829.232 kb on + strand at 829.232 kb on + strand at 829.232 kb on + strand at 829.232 kb on + strand at 829.235 kb on - strand at 829.240 kb on - strand at 829.240 kb on - strand at 829.240 kb on - strand at 829.240 kb on - strand at 829.240 kb on - strand at 829.266 kb on - strand at 829.266 kb on - strand at 829.266 kb on - strand at 829.311 kb on + strand at 829.311 kb on + strand at 829.311 kb on + strand at 829.311 kb on + strand at 829.311 kb on + strand at 829.311 kb on + strand at 829.319 kb on - strand at 829.319 kb on - strand at 829.319 kb on - strand at 829.319 kb on - strand at 829.343 kb on + strand at 829.382 kb on - strand at 829.404 kb on - strand, within Dsui_0818 at 829.438 kb on - strand, within Dsui_0818 at 829.473 kb on + strand, within Dsui_0818 at 829.473 kb on + strand, within Dsui_0818 at 829.481 kb on - strand, within Dsui_0818 at 829.481 kb on - strand, within Dsui_0818 at 829.574 kb on + strand, within Dsui_0818
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 50 mM remove 826,699 + +0.1 826,699 + -0.1 826,707 - +0.1 826,707 - +0.2 826,707 - +0.1 826,753 - +0.1 826,854 + -1.4 826,854 + +1.1 826,862 - +0.8 826,926 + Dsui_0815 0.17 -1.7 826,928 - Dsui_0815 0.18 -0.4 826,952 - Dsui_0815 0.21 -0.3 826,952 - Dsui_0815 0.21 -0.3 826,952 - Dsui_0815 0.21 -0.3 826,957 - Dsui_0815 0.21 -0.2 826,976 - Dsui_0815 0.23 -0.2 826,980 + Dsui_0815 0.24 -2.3 827,015 - Dsui_0815 0.28 -0.0 827,135 - Dsui_0815 0.42 -0.5 827,155 - Dsui_0815 0.45 -0.2 827,232 - Dsui_0815 0.54 -0.4 827,259 - Dsui_0815 0.57 -0.0 827,308 - Dsui_0815 0.63 +0.3 827,328 + Dsui_0815 0.65 -0.6 827,352 + Dsui_0815 0.68 -0.9 827,352 + Dsui_0815 0.68 -0.7 827,363 + Dsui_0815 0.69 -0.0 827,363 + Dsui_0815 0.69 -0.8 827,409 - Dsui_0815 0.75 -0.3 827,413 - Dsui_0815 0.75 -0.2 827,419 - Dsui_0815 0.76 -0.4 827,450 + Dsui_0815 0.79 -1.0 827,461 + Dsui_0815 0.81 -0.8 827,507 + Dsui_0815 0.86 -1.4 827,508 + Dsui_0815 0.86 -0.8 827,508 + Dsui_0815 0.86 -0.3 827,531 + Dsui_0815 0.89 -1.0 827,531 + Dsui_0815 0.89 -0.7 827,561 - -0.3 827,596 + -1.0 827,620 - +0.0 827,623 + -0.6 827,623 + +0.5 827,630 + -1.5 827,631 - -0.1 827,709 + +0.2 827,709 + -0.5 827,717 - +0.2 828,639 + -1.6 828,639 + -1.0 828,639 + -2.5 828,639 - -0.0 828,639 - +0.1 828,639 - +0.1 828,644 + -1.8 828,644 - +0.0 828,647 - +0.0 828,647 - -0.3 828,652 - +0.2 829,151 - -0.6 829,155 + -1.1 829,163 - -1.7 829,189 + -0.5 829,225 + -0.3 829,225 + +0.0 829,232 + -0.3 829,232 + -0.2 829,232 + +0.1 829,232 + -0.2 829,232 + -0.1 829,232 + +0.1 829,232 + -0.3 829,232 + -0.0 829,235 - -0.1 829,240 - +0.2 829,240 - +0.1 829,240 - -0.2 829,240 - +0.1 829,240 - +0.1 829,266 - -0.2 829,266 - +0.1 829,266 - -0.1 829,311 + -0.1 829,311 + -0.4 829,311 + -0.0 829,311 + +0.1 829,311 + +0.2 829,311 + +0.0 829,319 - +0.1 829,319 - -0.0 829,319 - -0.2 829,319 - -0.0 829,343 + +0.1 829,382 - +0.5 829,404 - Dsui_0818 0.11 +0.5 829,438 - Dsui_0818 0.15 +0.5 829,473 + Dsui_0818 0.18 +0.7 829,473 + Dsui_0818 0.18 -0.7 829,481 - Dsui_0818 0.19 -1.1 829,481 - Dsui_0818 0.19 +0.5 829,574 + Dsui_0818 0.27 +0.2
Or see this region's nucleotide sequence