Strain Fitness in Dechlorosoma suillum PS around Dsui_0807

Experiment: ALP with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0806 and Dsui_0807 are separated by 99 nucleotidesDsui_0807 and Dsui_0808 are separated by 10 nucleotides Dsui_0806: Dsui_0806 - uroporphyrinogen decarboxylase, at 815,189 to 816,271 _0806 Dsui_0807: Dsui_0807 - Trk-type K+ transport system, membrane component, at 816,371 to 817,828 _0807 Dsui_0808: Dsui_0808 - K+ transport system, NAD-binding component, at 817,839 to 819,269 _0808 Position (kb) 816 817 818Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 816.326 kb on + strandat 816.326 kb on + strandat 816.447 kb on + strandat 816.458 kb on + strandat 816.475 kb on + strandat 816.478 kb on - strandat 816.544 kb on - strand, within Dsui_0807at 816.592 kb on + strand, within Dsui_0807at 816.623 kb on - strand, within Dsui_0807at 816.640 kb on - strand, within Dsui_0807at 816.640 kb on - strand, within Dsui_0807at 816.640 kb on - strand, within Dsui_0807at 816.719 kb on - strand, within Dsui_0807at 816.729 kb on - strand, within Dsui_0807at 816.751 kb on - strand, within Dsui_0807at 816.779 kb on + strand, within Dsui_0807at 816.819 kb on + strand, within Dsui_0807at 816.819 kb on + strand, within Dsui_0807at 816.837 kb on - strand, within Dsui_0807at 816.849 kb on + strand, within Dsui_0807at 816.856 kb on - strand, within Dsui_0807at 816.857 kb on - strand, within Dsui_0807at 816.857 kb on - strand, within Dsui_0807at 816.861 kb on - strand, within Dsui_0807at 816.864 kb on + strandat 816.876 kb on - strand, within Dsui_0807at 816.906 kb on + strand, within Dsui_0807at 816.911 kb on + strand, within Dsui_0807at 816.914 kb on - strand, within Dsui_0807at 816.914 kb on - strand, within Dsui_0807at 816.914 kb on - strand, within Dsui_0807at 816.919 kb on - strand, within Dsui_0807at 816.929 kb on - strand, within Dsui_0807at 816.932 kb on + strand, within Dsui_0807at 816.963 kb on - strand, within Dsui_0807at 817.017 kb on - strand, within Dsui_0807at 817.036 kb on + strand, within Dsui_0807at 817.038 kb on - strand, within Dsui_0807at 817.066 kb on - strand, within Dsui_0807at 817.080 kb on + strand, within Dsui_0807at 817.080 kb on + strand, within Dsui_0807at 817.081 kb on - strand, within Dsui_0807at 817.085 kb on + strand, within Dsui_0807at 817.085 kb on - strandat 817.098 kb on - strand, within Dsui_0807at 817.125 kb on + strand, within Dsui_0807at 817.141 kb on + strand, within Dsui_0807at 817.171 kb on + strand, within Dsui_0807at 817.179 kb on - strand, within Dsui_0807at 817.179 kb on - strand, within Dsui_0807at 817.179 kb on - strand, within Dsui_0807at 817.221 kb on + strand, within Dsui_0807at 817.229 kb on - strand, within Dsui_0807at 817.234 kb on - strand, within Dsui_0807at 817.261 kb on - strand, within Dsui_0807at 817.277 kb on - strand, within Dsui_0807at 817.279 kb on - strand, within Dsui_0807at 817.311 kb on - strand, within Dsui_0807at 817.341 kb on + strand, within Dsui_0807at 817.349 kb on - strand, within Dsui_0807at 817.349 kb on - strand, within Dsui_0807at 817.351 kb on + strand, within Dsui_0807at 817.413 kb on - strand, within Dsui_0807at 817.413 kb on - strand, within Dsui_0807at 817.414 kb on + strand, within Dsui_0807at 817.423 kb on + strand, within Dsui_0807at 817.426 kb on + strand, within Dsui_0807at 817.434 kb on - strand, within Dsui_0807at 817.465 kb on - strand, within Dsui_0807at 817.471 kb on + strand, within Dsui_0807at 817.504 kb on - strand, within Dsui_0807at 817.512 kb on - strand, within Dsui_0807at 817.512 kb on - strand, within Dsui_0807at 817.564 kb on + strand, within Dsui_0807at 817.578 kb on - strand, within Dsui_0807at 817.593 kb on + strand, within Dsui_0807at 817.596 kb on - strand, within Dsui_0807at 817.598 kb on + strand, within Dsui_0807at 817.598 kb on + strand, within Dsui_0807at 817.601 kb on - strand, within Dsui_0807at 817.606 kb on - strand, within Dsui_0807at 817.606 kb on - strand, within Dsui_0807at 817.606 kb on - strand, within Dsui_0807at 817.612 kb on + strand, within Dsui_0807at 817.685 kb on - strandat 817.708 kb on - strandat 817.725 kb on - strandat 817.733 kb on + strandat 817.755 kb on - strandat 817.799 kb on + strandat 817.800 kb on - strandat 817.800 kb on - strandat 817.806 kb on - strandat 817.812 kb on + strandat 817.820 kb on - strandat 817.820 kb on - strandat 817.820 kb on - strandat 817.838 kb on - strandat 817.949 kb on + strandat 817.964 kb on - strandat 817.972 kb on + strandat 818.050 kb on + strand, within Dsui_0808at 818.050 kb on + strand, within Dsui_0808at 818.050 kb on + strand, within Dsui_0808at 818.050 kb on + strand, within Dsui_0808at 818.050 kb on + strand, within Dsui_0808at 818.050 kb on + strand, within Dsui_0808at 818.050 kb on + strand, within Dsui_0808at 818.058 kb on - strand, within Dsui_0808at 818.058 kb on - strand, within Dsui_0808at 818.058 kb on - strand, within Dsui_0808at 818.058 kb on - strand, within Dsui_0808at 818.058 kb on - strand, within Dsui_0808at 818.058 kb on - strand, within Dsui_0808at 818.058 kb on - strand, within Dsui_0808at 818.068 kb on - strand, within Dsui_0808at 818.075 kb on + strand, within Dsui_0808at 818.163 kb on - strand, within Dsui_0808at 818.190 kb on + strand, within Dsui_0808at 818.198 kb on - strand, within Dsui_0808at 818.247 kb on + strand, within Dsui_0808at 818.247 kb on + strand, within Dsui_0808at 818.252 kb on + strand, within Dsui_0808at 818.255 kb on - strand, within Dsui_0808at 818.255 kb on - strand, within Dsui_0808at 818.271 kb on - strand, within Dsui_0808at 818.302 kb on + strand, within Dsui_0808at 818.360 kb on + strand, within Dsui_0808at 818.391 kb on + strand, within Dsui_0808at 818.394 kb on - strand, within Dsui_0808at 818.406 kb on + strand, within Dsui_0808at 818.411 kb on + strand, within Dsui_0808at 818.432 kb on + strand, within Dsui_0808at 818.432 kb on + strand, within Dsui_0808at 818.435 kb on - strand, within Dsui_0808at 818.440 kb on - strand, within Dsui_0808at 818.440 kb on - strand, within Dsui_0808at 818.440 kb on - strand, within Dsui_0808at 818.440 kb on - strand, within Dsui_0808at 818.443 kb on - strand, within Dsui_0808at 818.445 kb on + strand, within Dsui_0808at 818.458 kb on - strand, within Dsui_0808at 818.465 kb on + strand, within Dsui_0808at 818.511 kb on + strand, within Dsui_0808at 818.637 kb on + strand, within Dsui_0808at 818.656 kb on + strand, within Dsui_0808at 818.682 kb on - strand, within Dsui_0808

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrate 50 mM
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816,326 + -0.0
816,326 + -0.0
816,447 + -1.8
816,458 + -1.1
816,475 + -2.3
816,478 - -2.5
816,544 - Dsui_0807 0.12 -1.1
816,592 + Dsui_0807 0.15 +0.5
816,623 - Dsui_0807 0.17 -0.2
816,640 - Dsui_0807 0.18 -0.5
816,640 - Dsui_0807 0.18 -0.5
816,640 - Dsui_0807 0.18 -0.1
816,719 - Dsui_0807 0.24 -0.5
816,729 - Dsui_0807 0.25 -2.1
816,751 - Dsui_0807 0.26 -1.0
816,779 + Dsui_0807 0.28 +0.1
816,819 + Dsui_0807 0.31 +0.5
816,819 + Dsui_0807 0.31 +0.5
816,837 - Dsui_0807 0.32 +0.9
816,849 + Dsui_0807 0.33 -2.3
816,856 - Dsui_0807 0.33 -0.6
816,857 - Dsui_0807 0.33 -0.6
816,857 - Dsui_0807 0.33 -0.3
816,861 - Dsui_0807 0.34 -0.8
816,864 + +0.5
816,876 - Dsui_0807 0.35 -0.7
816,906 + Dsui_0807 0.37 +1.5
816,911 + Dsui_0807 0.37 -2.0
816,914 - Dsui_0807 0.37 +0.0
816,914 - Dsui_0807 0.37 -1.3
816,914 - Dsui_0807 0.37 -0.6
816,919 - Dsui_0807 0.38 +0.5
816,929 - Dsui_0807 0.38 -0.3
816,932 + Dsui_0807 0.38 +0.5
816,963 - Dsui_0807 0.41 -2.0
817,017 - Dsui_0807 0.44 -0.4
817,036 + Dsui_0807 0.46 -2.5
817,038 - Dsui_0807 0.46 -0.9
817,066 - Dsui_0807 0.48 -0.8
817,080 + Dsui_0807 0.49 -2.4
817,080 + Dsui_0807 0.49 -1.5
817,081 - Dsui_0807 0.49 -0.6
817,085 + Dsui_0807 0.49 +0.5
817,085 - +1.8
817,098 - Dsui_0807 0.50 -1.1
817,125 + Dsui_0807 0.52 -1.5
817,141 + Dsui_0807 0.53 +0.5
817,171 + Dsui_0807 0.55 -1.8
817,179 - Dsui_0807 0.55 -0.1
817,179 - Dsui_0807 0.55 -0.1
817,179 - Dsui_0807 0.55 -0.1
817,221 + Dsui_0807 0.58 -1.8
817,229 - Dsui_0807 0.59 -1.2
817,234 - Dsui_0807 0.59 +0.5
817,261 - Dsui_0807 0.61 +0.1
817,277 - Dsui_0807 0.62 +0.5
817,279 - Dsui_0807 0.62 -0.1
817,311 - Dsui_0807 0.64 -1.0
817,341 + Dsui_0807 0.67 +0.5
817,349 - Dsui_0807 0.67 -1.4
817,349 - Dsui_0807 0.67 -0.5
817,351 + Dsui_0807 0.67 -0.8
817,413 - Dsui_0807 0.71 -0.6
817,413 - Dsui_0807 0.71 -0.7
817,414 + Dsui_0807 0.72 +0.5
817,423 + Dsui_0807 0.72 -1.1
817,426 + Dsui_0807 0.72 -0.8
817,434 - Dsui_0807 0.73 -1.1
817,465 - Dsui_0807 0.75 -0.4
817,471 + Dsui_0807 0.75 -0.3
817,504 - Dsui_0807 0.78 -0.1
817,512 - Dsui_0807 0.78 -1.1
817,512 - Dsui_0807 0.78 -1.3
817,564 + Dsui_0807 0.82 -2.1
817,578 - Dsui_0807 0.83 -0.9
817,593 + Dsui_0807 0.84 -1.3
817,596 - Dsui_0807 0.84 +0.3
817,598 + Dsui_0807 0.84 -0.1
817,598 + Dsui_0807 0.84 -0.5
817,601 - Dsui_0807 0.84 -0.8
817,606 - Dsui_0807 0.85 -0.6
817,606 - Dsui_0807 0.85 -0.9
817,606 - Dsui_0807 0.85 -0.3
817,612 + Dsui_0807 0.85 -0.5
817,685 - -0.1
817,708 - +0.2
817,725 - -0.9
817,733 + -2.1
817,755 - -1.5
817,799 + -0.5
817,800 - -1.5
817,800 - -1.1
817,806 - +0.1
817,812 + -0.1
817,820 - -0.3
817,820 - -0.8
817,820 - -0.6
817,838 - -1.1
817,949 + -3.2
817,964 - -1.6
817,972 + +1.5
818,050 + Dsui_0808 0.15 -2.1
818,050 + Dsui_0808 0.15 -0.5
818,050 + Dsui_0808 0.15 -0.5
818,050 + Dsui_0808 0.15 -0.3
818,050 + Dsui_0808 0.15 -1.2
818,050 + Dsui_0808 0.15 -1.6
818,050 + Dsui_0808 0.15 -2.1
818,058 - Dsui_0808 0.15 -1.1
818,058 - Dsui_0808 0.15 +0.5
818,058 - Dsui_0808 0.15 -0.3
818,058 - Dsui_0808 0.15 -3.3
818,058 - Dsui_0808 0.15 -0.0
818,058 - Dsui_0808 0.15 +0.6
818,058 - Dsui_0808 0.15 +0.7
818,068 - Dsui_0808 0.16 -0.4
818,075 + Dsui_0808 0.16 -2.5
818,163 - Dsui_0808 0.23 -1.4
818,190 + Dsui_0808 0.25 -0.1
818,198 - Dsui_0808 0.25 -0.3
818,247 + Dsui_0808 0.29 -0.6
818,247 + Dsui_0808 0.29 -2.3
818,252 + Dsui_0808 0.29 +0.5
818,255 - Dsui_0808 0.29 -0.3
818,255 - Dsui_0808 0.29 -0.2
818,271 - Dsui_0808 0.30 -0.9
818,302 + Dsui_0808 0.32 +0.5
818,360 + Dsui_0808 0.36 -1.5
818,391 + Dsui_0808 0.39 -0.5
818,394 - Dsui_0808 0.39 -1.3
818,406 + Dsui_0808 0.40 -0.3
818,411 + Dsui_0808 0.40 -1.0
818,432 + Dsui_0808 0.41 -1.0
818,432 + Dsui_0808 0.41 +1.2
818,435 - Dsui_0808 0.42 -0.5
818,440 - Dsui_0808 0.42 -0.5
818,440 - Dsui_0808 0.42 +0.8
818,440 - Dsui_0808 0.42 -0.4
818,440 - Dsui_0808 0.42 -0.8
818,443 - Dsui_0808 0.42 +0.5
818,445 + Dsui_0808 0.42 -1.1
818,458 - Dsui_0808 0.43 -0.3
818,465 + Dsui_0808 0.44 +0.1
818,511 + Dsui_0808 0.47 -1.5
818,637 + Dsui_0808 0.56 +0.5
818,656 + Dsui_0808 0.57 -0.7
818,682 - Dsui_0808 0.59 -0.3

Or see this region's nucleotide sequence