Strain Fitness in Dechlorosoma suillum PS around Dsui_0780

Experiment: ALP with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0779 and Dsui_0780 are separated by 286 nucleotidesDsui_0780 and Dsui_0781 are separated by 161 nucleotides Dsui_0779: Dsui_0779 - 5-methyltetrahydrofolate--homocysteine methyltransferase, at 783,472 to 787,152 _0779 Dsui_0780: Dsui_0780 - acetoacetyl-CoA reductase, at 787,439 to 788,176 _0780 Dsui_0781: Dsui_0781 - putative ferric reductase, at 788,338 to 789,702 _0781 Position (kb) 787 788 789Strain fitness (log2 ratio) -3 -2 -1 0 1at 787.112 kb on + strandat 787.154 kb on - strandat 787.191 kb on - strandat 787.246 kb on - strandat 787.344 kb on + strandat 787.353 kb on - strandat 787.379 kb on - strandat 787.397 kb on - strandat 787.403 kb on + strandat 787.443 kb on + strandat 787.510 kb on - strandat 787.518 kb on + strand, within Dsui_0780at 787.526 kb on - strand, within Dsui_0780at 787.526 kb on - strand, within Dsui_0780at 787.583 kb on + strand, within Dsui_0780at 787.583 kb on + strand, within Dsui_0780at 787.583 kb on + strand, within Dsui_0780at 787.588 kb on + strandat 787.588 kb on + strand, within Dsui_0780at 787.588 kb on + strand, within Dsui_0780at 787.588 kb on + strand, within Dsui_0780at 787.596 kb on - strand, within Dsui_0780at 787.604 kb on - strand, within Dsui_0780at 787.606 kb on - strand, within Dsui_0780at 787.665 kb on - strand, within Dsui_0780at 787.665 kb on - strand, within Dsui_0780at 787.665 kb on - strand, within Dsui_0780at 787.743 kb on - strand, within Dsui_0780at 787.769 kb on + strand, within Dsui_0780at 787.769 kb on + strand, within Dsui_0780at 787.779 kb on - strand, within Dsui_0780at 787.810 kb on + strand, within Dsui_0780at 787.870 kb on - strand, within Dsui_0780at 787.883 kb on - strand, within Dsui_0780at 787.894 kb on - strand, within Dsui_0780at 787.944 kb on - strand, within Dsui_0780at 787.966 kb on + strand, within Dsui_0780at 787.983 kb on - strand, within Dsui_0780at 788.019 kb on + strand, within Dsui_0780at 788.069 kb on + strand, within Dsui_0780at 788.096 kb on - strand, within Dsui_0780at 788.144 kb on - strandat 788.179 kb on - strandat 788.193 kb on + strandat 788.201 kb on - strandat 788.201 kb on - strandat 788.201 kb on - strandat 788.201 kb on - strandat 788.206 kb on - strandat 788.259 kb on - strandat 788.300 kb on - strandat 788.354 kb on - strandat 788.371 kb on + strandat 788.373 kb on - strandat 788.380 kb on - strandat 788.423 kb on - strandat 788.463 kb on - strandat 788.463 kb on - strandat 788.469 kb on + strandat 788.483 kb on - strand, within Dsui_0781at 788.486 kb on + strand, within Dsui_0781at 788.486 kb on + strand, within Dsui_0781at 788.533 kb on - strand, within Dsui_0781at 788.538 kb on + strandat 788.551 kb on + strand, within Dsui_0781at 788.591 kb on + strand, within Dsui_0781at 788.599 kb on - strand, within Dsui_0781at 788.599 kb on - strand, within Dsui_0781at 788.713 kb on - strand, within Dsui_0781at 788.718 kb on + strand, within Dsui_0781at 788.842 kb on - strandat 788.882 kb on + strand, within Dsui_0781at 788.890 kb on - strand, within Dsui_0781at 788.896 kb on + strand, within Dsui_0781at 788.899 kb on + strand, within Dsui_0781at 788.909 kb on + strand, within Dsui_0781at 789.059 kb on + strandat 789.099 kb on + strand, within Dsui_0781at 789.159 kb on + strand, within Dsui_0781

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrate 50 mM
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787,112 + +0.1
787,154 - -0.1
787,191 - -2.0
787,246 - -1.1
787,344 + -0.8
787,353 - -0.6
787,379 - -3.5
787,397 - +0.4
787,403 + -1.0
787,443 + -1.1
787,510 - +0.2
787,518 + Dsui_0780 0.11 -1.4
787,526 - Dsui_0780 0.12 +0.0
787,526 - Dsui_0780 0.12 -1.1
787,583 + Dsui_0780 0.20 -1.1
787,583 + Dsui_0780 0.20 -1.4
787,583 + Dsui_0780 0.20 -0.4
787,588 + +0.4
787,588 + Dsui_0780 0.20 -0.5
787,588 + Dsui_0780 0.20 -3.0
787,588 + Dsui_0780 0.20 -0.1
787,596 - Dsui_0780 0.21 -1.9
787,604 - Dsui_0780 0.22 -1.9
787,606 - Dsui_0780 0.23 -1.1
787,665 - Dsui_0780 0.31 +0.4
787,665 - Dsui_0780 0.31 -1.1
787,665 - Dsui_0780 0.31 -0.6
787,743 - Dsui_0780 0.41 +0.4
787,769 + Dsui_0780 0.45 -0.4
787,769 + Dsui_0780 0.45 +0.3
787,779 - Dsui_0780 0.46 -0.6
787,810 + Dsui_0780 0.50 -1.1
787,870 - Dsui_0780 0.58 +0.4
787,883 - Dsui_0780 0.60 -2.6
787,894 - Dsui_0780 0.62 +0.4
787,944 - Dsui_0780 0.68 +0.4
787,966 + Dsui_0780 0.71 +0.7
787,983 - Dsui_0780 0.74 +0.4
788,019 + Dsui_0780 0.79 -1.1
788,069 + Dsui_0780 0.85 -0.5
788,096 - Dsui_0780 0.89 -1.1
788,144 - -0.6
788,179 - +0.4
788,193 + -0.1
788,201 - +0.4
788,201 - +1.0
788,201 - +0.4
788,201 - -0.6
788,206 - +0.4
788,259 - -0.6
788,300 - -1.6
788,354 - +0.4
788,371 + -2.9
788,373 - +0.4
788,380 - -1.1
788,423 - +0.4
788,463 - -1.6
788,463 - +0.4
788,469 + -0.6
788,483 - Dsui_0781 0.11 -0.6
788,486 + Dsui_0781 0.11 -0.6
788,486 + Dsui_0781 0.11 -0.6
788,533 - Dsui_0781 0.14 -1.1
788,538 + +0.4
788,551 + Dsui_0781 0.16 -1.1
788,591 + Dsui_0781 0.19 -1.8
788,599 - Dsui_0781 0.19 -1.9
788,599 - Dsui_0781 0.19 -0.6
788,713 - Dsui_0781 0.27 +0.4
788,718 + Dsui_0781 0.28 -1.6
788,842 - -0.6
788,882 + Dsui_0781 0.40 -0.6
788,890 - Dsui_0781 0.40 -0.6
788,896 + Dsui_0781 0.41 +0.4
788,899 + Dsui_0781 0.41 +0.4
788,909 + Dsui_0781 0.42 -0.6
789,059 + +0.4
789,099 + Dsui_0781 0.56 +0.4
789,159 + Dsui_0781 0.60 -0.6

Or see this region's nucleotide sequence