Experiment: ALP with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0657 and Dsui_0658 are separated by 79 nucleotides Dsui_0658 and Dsui_0659 are separated by 14 nucleotides Dsui_0659 and Dsui_0660 are separated by 21 nucleotides Dsui_0660 and Dsui_0661 are separated by 90 nucleotides
Dsui_0657: Dsui_0657 - methyl-accepting chemotaxis protein, at 655,288 to 657,486
_0657
Dsui_0658: Dsui_0658 - chemotaxis signal transduction protein, at 657,566 to 658,078
_0658
Dsui_0659: Dsui_0659 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 658,093 to 658,455
_0659
Dsui_0660: Dsui_0660 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 658,477 to 658,875
_0660
Dsui_0661: Dsui_0661 - rubredoxin, at 658,966 to 659,166
_0661
Position (kb) 657
658
659 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 656.593 kb on - strand, within Dsui_0657 at 656.638 kb on - strand, within Dsui_0657 at 656.783 kb on - strand, within Dsui_0657 at 656.788 kb on - strand, within Dsui_0657 at 656.863 kb on - strand, within Dsui_0657 at 656.891 kb on + strand, within Dsui_0657 at 656.897 kb on + strand, within Dsui_0657 at 656.905 kb on - strand, within Dsui_0657 at 656.974 kb on + strand, within Dsui_0657 at 657.064 kb on - strand, within Dsui_0657 at 657.089 kb on + strand, within Dsui_0657 at 657.140 kb on + strand at 657.247 kb on - strand, within Dsui_0657 at 657.267 kb on - strand at 657.362 kb on + strand at 657.602 kb on + strand at 657.619 kb on + strand at 657.662 kb on + strand, within Dsui_0658 at 657.791 kb on - strand, within Dsui_0658 at 657.866 kb on - strand, within Dsui_0658 at 657.966 kb on - strand, within Dsui_0658 at 658.090 kb on + strand at 658.096 kb on - strand at 658.251 kb on + strand at 658.316 kb on - strand, within Dsui_0659 at 658.328 kb on + strand at 658.457 kb on + strand at 658.458 kb on - strand at 658.459 kb on - strand at 658.486 kb on - strand at 658.496 kb on - strand at 658.554 kb on + strand, within Dsui_0660 at 658.562 kb on - strand, within Dsui_0660 at 658.582 kb on - strand, within Dsui_0660 at 658.619 kb on + strand at 658.738 kb on - strand, within Dsui_0660 at 658.772 kb on - strand, within Dsui_0660 at 658.850 kb on - strand at 658.860 kb on - strand at 658.896 kb on + strand at 658.904 kb on - strand at 658.910 kb on - strand at 658.914 kb on - strand at 659.012 kb on + strand, within Dsui_0661
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 50 mM remove 656,593 - Dsui_0657 0.59 -0.6 656,638 - Dsui_0657 0.61 -0.9 656,783 - Dsui_0657 0.68 -0.6 656,788 - Dsui_0657 0.68 -0.4 656,863 - Dsui_0657 0.72 -0.6 656,891 + Dsui_0657 0.73 -0.6 656,897 + Dsui_0657 0.73 -1.2 656,905 - Dsui_0657 0.74 -0.4 656,974 + Dsui_0657 0.77 +1.4 657,064 - Dsui_0657 0.81 +0.1 657,089 + Dsui_0657 0.82 -1.2 657,140 + +0.4 657,247 - Dsui_0657 0.89 -0.8 657,267 - +0.1 657,362 + +0.4 657,602 + -0.8 657,619 + +0.4 657,662 + Dsui_0658 0.19 +0.4 657,791 - Dsui_0658 0.44 +0.2 657,866 - Dsui_0658 0.58 +0.2 657,966 - Dsui_0658 0.78 +0.3 658,090 + +0.4 658,096 - -0.0 658,251 + +0.4 658,316 - Dsui_0659 0.61 -2.8 658,328 + +0.4 658,457 + +0.4 658,458 - -0.1 658,459 - -0.4 658,486 - +0.3 658,496 - +0.5 658,554 + Dsui_0660 0.19 -1.6 658,562 - Dsui_0660 0.21 -0.6 658,582 - Dsui_0660 0.26 -0.4 658,619 + +0.4 658,738 - Dsui_0660 0.65 -0.1 658,772 - Dsui_0660 0.74 -0.1 658,850 - -0.2 658,860 - -0.4 658,896 + +0.4 658,904 - -0.9 658,910 - -0.3 658,914 - -0.3 659,012 + Dsui_0661 0.23 +0.4
Or see this region's nucleotide sequence