Experiment: ALP with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0653 and Dsui_0654 are separated by 238 nucleotides Dsui_0654 and Dsui_0655 are separated by 125 nucleotides Dsui_0655 and Dsui_0656 are separated by 57 nucleotides
Dsui_0653: Dsui_0653 - putative SAM-dependent methyltransferase, at 646,444 to 647,631
_0653
Dsui_0654: Dsui_0654 - hypothetical protein, at 647,870 to 648,325
_0654
Dsui_0655: Dsui_0655 - putative membrane protein, at 648,451 to 649,077
_0655
Dsui_0656: Dsui_0656 - chemotaxis protein histidine kinase-like protein, at 649,135 to 655,254
_0656
Position (kb) 648
649
650 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 647.534 kb on + strand at 647.604 kb on + strand at 647.866 kb on + strand at 647.940 kb on - strand at 647.955 kb on - strand, within Dsui_0654 at 647.967 kb on + strand, within Dsui_0654 at 647.989 kb on - strand, within Dsui_0654 at 647.990 kb on - strand, within Dsui_0654 at 648.044 kb on - strand at 648.101 kb on + strand, within Dsui_0654 at 648.138 kb on + strand, within Dsui_0654 at 648.144 kb on - strand at 648.185 kb on + strand, within Dsui_0654 at 648.190 kb on + strand, within Dsui_0654 at 648.193 kb on - strand, within Dsui_0654 at 648.211 kb on + strand, within Dsui_0654 at 648.225 kb on + strand at 648.226 kb on - strand, within Dsui_0654 at 648.274 kb on + strand, within Dsui_0654 at 648.282 kb on - strand at 648.399 kb on + strand at 648.421 kb on - strand at 648.421 kb on - strand at 648.423 kb on + strand at 648.448 kb on + strand at 648.497 kb on + strand at 648.505 kb on - strand at 648.582 kb on + strand, within Dsui_0655 at 648.592 kb on + strand, within Dsui_0655 at 648.600 kb on - strand, within Dsui_0655 at 648.622 kb on + strand, within Dsui_0655 at 648.675 kb on + strand, within Dsui_0655 at 648.712 kb on - strand, within Dsui_0655 at 648.910 kb on + strand, within Dsui_0655 at 649.004 kb on - strand, within Dsui_0655 at 649.004 kb on - strand, within Dsui_0655 at 649.006 kb on + strand, within Dsui_0655 at 649.014 kb on - strand, within Dsui_0655 at 649.072 kb on + strand at 649.073 kb on + strand at 649.080 kb on - strand at 649.157 kb on + strand at 649.157 kb on + strand at 649.157 kb on + strand at 649.211 kb on - strand at 649.215 kb on + strand at 649.216 kb on - strand at 649.243 kb on - strand at 649.334 kb on - strand at 649.395 kb on + strand at 649.403 kb on - strand at 649.478 kb on + strand at 649.486 kb on - strand at 649.529 kb on + strand at 649.546 kb on + strand at 649.610 kb on - strand at 649.783 kb on - strand, within Dsui_0656 at 649.804 kb on + strand, within Dsui_0656 at 649.852 kb on - strand, within Dsui_0656 at 649.852 kb on - strand, within Dsui_0656 at 649.853 kb on + strand, within Dsui_0656 at 649.867 kb on + strand, within Dsui_0656 at 649.885 kb on - strand, within Dsui_0656 at 649.913 kb on + strand, within Dsui_0656 at 649.973 kb on + strand, within Dsui_0656 at 649.997 kb on - strand, within Dsui_0656
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 50 mM remove 647,534 + +0.4 647,604 + -0.6 647,866 + -1.6 647,940 - +0.4 647,955 - Dsui_0654 0.19 +0.4 647,967 + Dsui_0654 0.21 -2.8 647,989 - Dsui_0654 0.26 -0.6 647,990 - Dsui_0654 0.26 -2.9 648,044 - +0.4 648,101 + Dsui_0654 0.51 -3.2 648,138 + Dsui_0654 0.59 -1.2 648,144 - +0.4 648,185 + Dsui_0654 0.69 -1.2 648,190 + Dsui_0654 0.70 +0.4 648,193 - Dsui_0654 0.71 +0.4 648,211 + Dsui_0654 0.75 +0.4 648,225 + +0.4 648,226 - Dsui_0654 0.78 -0.6 648,274 + Dsui_0654 0.89 -1.2 648,282 - -1.2 648,399 + +0.4 648,421 - -2.4 648,421 - +0.4 648,423 + -1.9 648,448 + -1.6 648,497 + -0.6 648,505 - -0.6 648,582 + Dsui_0655 0.21 -1.9 648,592 + Dsui_0655 0.22 -0.6 648,600 - Dsui_0655 0.24 +0.4 648,622 + Dsui_0655 0.27 -1.2 648,675 + Dsui_0655 0.36 -0.5 648,712 - Dsui_0655 0.42 -2.4 648,910 + Dsui_0655 0.73 +0.4 649,004 - Dsui_0655 0.88 +0.4 649,004 - Dsui_0655 0.88 -2.0 649,006 + Dsui_0655 0.89 +0.4 649,014 - Dsui_0655 0.90 -0.6 649,072 + -0.6 649,073 + -0.6 649,080 - -0.6 649,157 + -0.7 649,157 + -0.6 649,157 + +0.4 649,211 - -0.1 649,215 + +0.4 649,216 - +0.1 649,243 - -0.1 649,334 - -0.2 649,395 + -0.6 649,403 - +0.0 649,478 + -0.6 649,486 - +0.1 649,529 + +0.4 649,546 + -1.2 649,610 - +0.2 649,783 - Dsui_0656 0.11 -0.2 649,804 + Dsui_0656 0.11 -0.3 649,852 - Dsui_0656 0.12 -0.2 649,852 - Dsui_0656 0.12 -0.1 649,853 + Dsui_0656 0.12 -1.2 649,867 + Dsui_0656 0.12 -1.6 649,885 - Dsui_0656 0.12 -0.3 649,913 + Dsui_0656 0.13 -1.6 649,973 + Dsui_0656 0.14 +0.4 649,997 - Dsui_0656 0.14 -0.8
Or see this region's nucleotide sequence