Experiment: ALP with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0571 and Dsui_0572 are separated by 9 nucleotides Dsui_0572 and Dsui_0573 are separated by 241 nucleotides Dsui_0573 and Dsui_0574 are separated by 16 nucleotides
Dsui_0571: Dsui_0571 - ferredoxin, at 570,546 to 570,869
_0571
Dsui_0572: Dsui_0572 - hypothetical protein, at 570,879 to 571,334
_0572
Dsui_0573: Dsui_0573 - ferredoxin-like protein, at 571,576 to 571,863
_0573
Dsui_0574: Dsui_0574 - flavin-dependent dehydrogenase, at 571,880 to 573,178
_0574
Position (kb) 571
572 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 570.656 kb on - strand, within Dsui_0571 at 570.698 kb on + strand, within Dsui_0571 at 571.022 kb on - strand, within Dsui_0572 at 571.041 kb on - strand, within Dsui_0572 at 571.138 kb on - strand, within Dsui_0572 at 571.171 kb on + strand, within Dsui_0572 at 571.194 kb on + strand, within Dsui_0572 at 571.251 kb on - strand, within Dsui_0572 at 571.297 kb on - strand at 571.317 kb on - strand at 571.406 kb on + strand at 571.416 kb on - strand at 571.458 kb on + strand at 571.534 kb on + strand at 571.534 kb on - strand at 571.535 kb on + strand at 571.535 kb on + strand at 571.535 kb on + strand at 571.535 kb on + strand at 571.543 kb on - strand at 571.543 kb on - strand at 571.562 kb on + strand at 571.701 kb on + strand, within Dsui_0573 at 571.721 kb on - strand, within Dsui_0573 at 571.758 kb on - strand at 571.873 kb on - strand at 571.978 kb on + strand at 572.014 kb on - strand, within Dsui_0574 at 572.014 kb on - strand, within Dsui_0574 at 572.146 kb on + strand at 572.192 kb on + strand, within Dsui_0574 at 572.303 kb on - strand, within Dsui_0574 at 572.303 kb on - strand at 572.321 kb on - strand, within Dsui_0574 at 572.339 kb on - strand, within Dsui_0574 at 572.430 kb on + strand at 572.505 kb on + strand, within Dsui_0574 at 572.638 kb on - strand, within Dsui_0574 at 572.645 kb on - strand at 572.793 kb on - strand, within Dsui_0574 at 572.821 kb on - strand at 572.838 kb on - strand, within Dsui_0574
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 50 mM remove 570,656 - Dsui_0571 0.34 -1.2 570,698 + Dsui_0571 0.47 -1.6 571,022 - Dsui_0572 0.31 -1.0 571,041 - Dsui_0572 0.36 -0.8 571,138 - Dsui_0572 0.57 -2.2 571,171 + Dsui_0572 0.64 -1.2 571,194 + Dsui_0572 0.69 +0.4 571,251 - Dsui_0572 0.82 -1.0 571,297 - -0.5 571,317 - +0.4 571,406 + +0.4 571,416 - -0.6 571,458 + +0.4 571,534 + +0.4 571,534 - -0.9 571,535 + -1.2 571,535 + -1.6 571,535 + +0.4 571,535 + +0.4 571,543 - -0.6 571,543 - -0.2 571,562 + -1.2 571,701 + Dsui_0573 0.43 -2.2 571,721 - Dsui_0573 0.50 -1.2 571,758 - -0.6 571,873 - -1.6 571,978 + +0.4 572,014 - Dsui_0574 0.10 +0.4 572,014 - Dsui_0574 0.10 -0.6 572,146 + +0.4 572,192 + Dsui_0574 0.24 +0.4 572,303 - Dsui_0574 0.33 +0.4 572,303 - +0.4 572,321 - Dsui_0574 0.34 +0.4 572,339 - Dsui_0574 0.35 -1.2 572,430 + +0.4 572,505 + Dsui_0574 0.48 -1.2 572,638 - Dsui_0574 0.58 -2.5 572,645 - -0.6 572,793 - Dsui_0574 0.70 -0.6 572,821 - -0.6 572,838 - Dsui_0574 0.74 -3.2
Or see this region's nucleotide sequence