Experiment: ALP with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0520 and Dsui_0521 are separated by 75 nucleotides Dsui_0521 and Dsui_0522 are separated by 94 nucleotides
Dsui_0520: Dsui_0520 - transcriptional regulator, at 527,564 to 528,220
_0520
Dsui_0521: Dsui_0521 - enoyl-CoA hydratase/carnithine racemase, at 528,296 to 529,072
_0521
Dsui_0522: Dsui_0522 - SSS sodium solute transporter, at 529,167 to 530,840
_0522
Position (kb) 528
529
530 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 527.302 kb on - strand at 527.511 kb on - strand at 527.563 kb on + strand at 527.674 kb on + strand, within Dsui_0520 at 527.720 kb on + strand, within Dsui_0520 at 527.754 kb on + strand, within Dsui_0520 at 527.791 kb on + strand, within Dsui_0520 at 527.791 kb on + strand, within Dsui_0520 at 527.883 kb on + strand, within Dsui_0520 at 527.952 kb on + strand, within Dsui_0520 at 527.953 kb on + strand, within Dsui_0520 at 527.960 kb on - strand, within Dsui_0520 at 527.960 kb on - strand, within Dsui_0520 at 528.101 kb on + strand, within Dsui_0520 at 528.168 kb on - strand at 528.194 kb on + strand at 528.205 kb on + strand at 528.207 kb on - strand at 528.347 kb on - strand at 528.347 kb on - strand at 528.429 kb on + strand, within Dsui_0521 at 528.442 kb on - strand, within Dsui_0521 at 528.530 kb on + strand, within Dsui_0521 at 528.594 kb on + strand, within Dsui_0521 at 528.596 kb on - strand, within Dsui_0521 at 528.599 kb on + strand, within Dsui_0521 at 528.692 kb on + strand, within Dsui_0521 at 528.827 kb on + strand, within Dsui_0521 at 528.846 kb on - strand, within Dsui_0521 at 528.854 kb on + strand, within Dsui_0521 at 528.856 kb on + strand, within Dsui_0521 at 528.940 kb on + strand, within Dsui_0521 at 528.967 kb on - strand, within Dsui_0521 at 528.967 kb on - strand, within Dsui_0521 at 529.045 kb on + strand at 529.055 kb on + strand at 529.123 kb on - strand at 529.200 kb on + strand at 529.200 kb on + strand at 529.247 kb on + strand at 529.296 kb on + strand at 529.304 kb on - strand at 529.306 kb on + strand at 529.319 kb on - strand at 529.348 kb on + strand, within Dsui_0522 at 529.375 kb on + strand, within Dsui_0522 at 529.375 kb on + strand, within Dsui_0522 at 529.375 kb on + strand, within Dsui_0522 at 529.383 kb on - strand, within Dsui_0522 at 529.383 kb on - strand, within Dsui_0522 at 529.383 kb on - strand, within Dsui_0522 at 529.383 kb on - strand, within Dsui_0522 at 529.383 kb on - strand, within Dsui_0522 at 529.439 kb on + strand, within Dsui_0522 at 529.467 kb on + strand, within Dsui_0522 at 529.481 kb on - strand, within Dsui_0522 at 529.551 kb on + strand, within Dsui_0522 at 529.613 kb on + strand, within Dsui_0522 at 529.632 kb on - strand, within Dsui_0522 at 529.662 kb on - strand, within Dsui_0522 at 529.669 kb on - strand, within Dsui_0522 at 529.681 kb on - strand, within Dsui_0522 at 529.743 kb on - strand, within Dsui_0522 at 529.781 kb on + strand, within Dsui_0522 at 529.819 kb on + strand, within Dsui_0522 at 529.855 kb on + strand, within Dsui_0522 at 529.868 kb on - strand, within Dsui_0522 at 529.873 kb on - strand, within Dsui_0522 at 530.025 kb on + strand, within Dsui_0522 at 530.046 kb on - strand, within Dsui_0522 at 530.046 kb on - strand, within Dsui_0522 at 530.071 kb on + strand, within Dsui_0522
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 50 mM remove 527,302 - -0.5 527,511 - +0.3 527,563 + -0.1 527,674 + Dsui_0520 0.17 -4.3 527,720 + Dsui_0520 0.24 -2.8 527,754 + Dsui_0520 0.29 -5.4 527,791 + Dsui_0520 0.35 -4.2 527,791 + Dsui_0520 0.35 -6.2 527,883 + Dsui_0520 0.49 -3.8 527,952 + Dsui_0520 0.59 -4.3 527,953 + Dsui_0520 0.59 -3.4 527,960 - Dsui_0520 0.60 +0.3 527,960 - Dsui_0520 0.60 -0.7 528,101 + Dsui_0520 0.82 -4.3 528,168 - -0.7 528,194 + -1.4 528,205 + -0.3 528,207 - +0.3 528,347 - -2.3 528,347 - +0.3 528,429 + Dsui_0521 0.17 +0.3 528,442 - Dsui_0521 0.19 +0.3 528,530 + Dsui_0521 0.30 +0.3 528,594 + Dsui_0521 0.38 +0.3 528,596 - Dsui_0521 0.39 +0.3 528,599 + Dsui_0521 0.39 -1.3 528,692 + Dsui_0521 0.51 -3.1 528,827 + Dsui_0521 0.68 -0.7 528,846 - Dsui_0521 0.71 -0.7 528,854 + Dsui_0521 0.72 +1.3 528,856 + Dsui_0521 0.72 -0.9 528,940 + Dsui_0521 0.83 -0.7 528,967 - Dsui_0521 0.86 +0.3 528,967 - Dsui_0521 0.86 -1.3 529,045 + -0.6 529,055 + -1.1 529,123 - -0.7 529,200 + -0.7 529,200 + +0.3 529,247 + -2.3 529,296 + -0.7 529,304 - -1.3 529,306 + +0.3 529,319 - -2.5 529,348 + Dsui_0522 0.11 -3.9 529,375 + Dsui_0522 0.12 +0.3 529,375 + Dsui_0522 0.12 -1.7 529,375 + Dsui_0522 0.12 -3.1 529,383 - Dsui_0522 0.13 -3.3 529,383 - Dsui_0522 0.13 -1.3 529,383 - Dsui_0522 0.13 -1.7 529,383 - Dsui_0522 0.13 -1.3 529,383 - Dsui_0522 0.13 -0.7 529,439 + Dsui_0522 0.16 +0.3 529,467 + Dsui_0522 0.18 -1.3 529,481 - Dsui_0522 0.19 -2.5 529,551 + Dsui_0522 0.23 -1.3 529,613 + Dsui_0522 0.27 -1.3 529,632 - Dsui_0522 0.28 -1.3 529,662 - Dsui_0522 0.30 -3.1 529,669 - Dsui_0522 0.30 +0.7 529,681 - Dsui_0522 0.31 -2.3 529,743 - Dsui_0522 0.34 +0.3 529,781 + Dsui_0522 0.37 -0.7 529,819 + Dsui_0522 0.39 -1.3 529,855 + Dsui_0522 0.41 -1.7 529,868 - Dsui_0522 0.42 -1.3 529,873 - Dsui_0522 0.42 +0.3 530,025 + Dsui_0522 0.51 +0.3 530,046 - Dsui_0522 0.53 -3.1 530,046 - Dsui_0522 0.53 -1.3 530,071 + Dsui_0522 0.54 -0.8
Or see this region's nucleotide sequence