Experiment: ALP with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0411 and Dsui_0412 are separated by 47 nucleotides Dsui_0412 and Dsui_0413 are separated by 13 nucleotides Dsui_0413 and Dsui_0414 overlap by 4 nucleotides
Dsui_0411: Dsui_0411 - ABC-type dipeptide transport system, periplasmic component, at 411,635 to 413,245
_0411
Dsui_0412: Dsui_0412 - ABC-type dipeptide/oligopeptide/nickel transport system, permease component, at 413,293 to 414,246
_0412
Dsui_0413: Dsui_0413 - ABC-type dipeptide/oligopeptide/nickel transport system, permease component, at 414,260 to 415,153
_0413
Dsui_0414: Dsui_0414 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, at 415,150 to 416,208
_0414
Position (kb) 413
414
415 Strain fitness (log2 ratio) -2
-1
0
1 at 412.324 kb on + strand, within Dsui_0411 at 412.441 kb on + strand at 412.441 kb on + strand, within Dsui_0411 at 412.494 kb on - strand, within Dsui_0411 at 412.679 kb on - strand, within Dsui_0411 at 412.722 kb on + strand, within Dsui_0411 at 412.730 kb on - strand, within Dsui_0411 at 412.745 kb on - strand, within Dsui_0411 at 412.759 kb on + strand at 412.759 kb on + strand, within Dsui_0411 at 412.839 kb on + strand, within Dsui_0411 at 412.839 kb on + strand, within Dsui_0411 at 412.944 kb on - strand, within Dsui_0411 at 412.960 kb on - strand, within Dsui_0411 at 413.039 kb on - strand, within Dsui_0411 at 413.085 kb on - strand at 413.268 kb on - strand at 413.269 kb on - strand at 413.327 kb on - strand at 413.402 kb on - strand, within Dsui_0412 at 413.448 kb on - strand, within Dsui_0412 at 413.469 kb on + strand at 413.527 kb on - strand at 413.527 kb on - strand, within Dsui_0412 at 413.623 kb on + strand, within Dsui_0412 at 413.724 kb on + strand, within Dsui_0412 at 413.872 kb on + strand at 413.902 kb on - strand, within Dsui_0412 at 413.965 kb on - strand, within Dsui_0412 at 414.109 kb on - strand, within Dsui_0412 at 414.221 kb on - strand at 414.365 kb on + strand at 414.583 kb on - strand at 414.640 kb on - strand at 414.845 kb on + strand, within Dsui_0413 at 414.965 kb on - strand at 415.013 kb on + strand at 415.018 kb on + strand at 415.076 kb on + strand at 415.101 kb on + strand at 415.101 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 50 mM remove 412,324 + Dsui_0411 0.43 -2.6 412,441 + -0.6 412,441 + Dsui_0411 0.50 -1.2 412,494 - Dsui_0411 0.53 +0.4 412,679 - Dsui_0411 0.65 -1.6 412,722 + Dsui_0411 0.67 -1.2 412,730 - Dsui_0411 0.68 +0.4 412,745 - Dsui_0411 0.69 -0.6 412,759 + +0.4 412,759 + Dsui_0411 0.70 +0.4 412,839 + Dsui_0411 0.75 -1.9 412,839 + Dsui_0411 0.75 -1.6 412,944 - Dsui_0411 0.81 +0.4 412,960 - Dsui_0411 0.82 -1.1 413,039 - Dsui_0411 0.87 +0.4 413,085 - +0.4 413,268 - -0.6 413,269 - -2.2 413,327 - -1.6 413,402 - Dsui_0412 0.11 -2.6 413,448 - Dsui_0412 0.16 -1.6 413,469 + +0.4 413,527 - +0.4 413,527 - Dsui_0412 0.25 -1.2 413,623 + Dsui_0412 0.35 +0.4 413,724 + Dsui_0412 0.45 +0.4 413,872 + +0.4 413,902 - Dsui_0412 0.64 -1.6 413,965 - Dsui_0412 0.70 +0.4 414,109 - Dsui_0412 0.86 -1.6 414,221 - -0.6 414,365 + -0.6 414,583 - -0.6 414,640 - -0.6 414,845 + Dsui_0413 0.65 -1.2 414,965 - -0.2 415,013 + -0.6 415,018 + -1.2 415,076 + +0.4 415,101 + +0.4 415,101 + +0.4
Or see this region's nucleotide sequence