Experiment: ALP with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0311 and Dsui_0312 are separated by 14 nucleotides Dsui_0312 and Dsui_0313 are separated by 45 nucleotides Dsui_0313 and Dsui_0314 are separated by 210 nucleotides
Dsui_0311: Dsui_0311 - ATP-dependent DNA helicase RecG, at 313,136 to 315,211
_0311
Dsui_0312: Dsui_0312 - endoribonuclease L-PSP, putative, at 315,226 to 315,606
_0312
Dsui_0313: Dsui_0313 - putative transcriptional regulator, at 315,652 to 316,005
_0313
Dsui_0314: Dsui_0314 - cell division protein, at 316,216 to 317,061
_0314
Position (kb) 315
316
317 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 314.659 kb on + strand, within Dsui_0311 at 314.687 kb on + strand at 314.756 kb on + strand at 314.941 kb on - strand, within Dsui_0311 at 315.022 kb on + strand at 315.045 kb on + strand at 315.129 kb on - strand at 315.129 kb on - strand at 315.224 kb on - strand at 315.664 kb on + strand at 315.725 kb on - strand, within Dsui_0313 at 315.727 kb on - strand at 315.741 kb on + strand, within Dsui_0313 at 315.741 kb on + strand at 315.749 kb on - strand, within Dsui_0313 at 315.749 kb on - strand, within Dsui_0313 at 315.749 kb on - strand, within Dsui_0313 at 315.749 kb on - strand, within Dsui_0313 at 315.749 kb on - strand, within Dsui_0313 at 315.756 kb on - strand, within Dsui_0313 at 315.776 kb on + strand, within Dsui_0313 at 315.851 kb on - strand, within Dsui_0313 at 315.967 kb on + strand at 315.999 kb on + strand at 316.089 kb on - strand at 316.091 kb on + strand at 316.109 kb on + strand at 316.168 kb on - strand at 316.214 kb on - strand at 316.273 kb on - strand at 316.313 kb on + strand, within Dsui_0314 at 316.327 kb on - strand, within Dsui_0314 at 316.359 kb on + strand, within Dsui_0314 at 316.411 kb on + strand at 316.459 kb on - strand, within Dsui_0314 at 316.701 kb on + strand, within Dsui_0314 at 316.951 kb on - strand, within Dsui_0314 at 316.962 kb on - strand, within Dsui_0314 at 316.973 kb on - strand, within Dsui_0314
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 50 mM remove 314,659 + Dsui_0311 0.73 -2.4 314,687 + +0.5 314,756 + +0.5 314,941 - Dsui_0311 0.87 -0.2 315,022 + +0.5 315,045 + -0.5 315,129 - +0.1 315,129 - +0.4 315,224 - +0.2 315,664 + +0.5 315,725 - Dsui_0313 0.21 -1.5 315,727 - -0.5 315,741 + Dsui_0313 0.25 -0.5 315,741 + +0.5 315,749 - Dsui_0313 0.27 -2.1 315,749 - Dsui_0313 0.27 -3.5 315,749 - Dsui_0313 0.27 +0.5 315,749 - Dsui_0313 0.27 -1.9 315,749 - Dsui_0313 0.27 -0.5 315,756 - Dsui_0313 0.29 -1.5 315,776 + Dsui_0313 0.35 -0.9 315,851 - Dsui_0313 0.56 +0.5 315,967 + +0.5 315,999 + -2.1 316,089 - -0.4 316,091 + -1.5 316,109 + -1.1 316,168 - +0.0 316,214 - -0.1 316,273 - -0.2 316,313 + Dsui_0314 0.11 -1.1 316,327 - Dsui_0314 0.13 -0.4 316,359 + Dsui_0314 0.17 -0.3 316,411 + +0.5 316,459 - Dsui_0314 0.29 -0.1 316,701 + Dsui_0314 0.57 -0.5 316,951 - Dsui_0314 0.87 +0.4 316,962 - Dsui_0314 0.88 -0.1 316,973 - Dsui_0314 0.89 -0.0
Or see this region's nucleotide sequence