Experiment: ALP with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0208 and Dsui_0209 overlap by 1 nucleotides Dsui_0209 and Dsui_0210 overlap by 1 nucleotides
Dsui_0208: Dsui_0208 - hypothetical protein, at 206,979 to 210,539
_0208
Dsui_0209: Dsui_0209 - hypothetical protein, at 210,539 to 211,630
_0209
Dsui_0210: Dsui_0210 - hypothetical protein, at 211,630 to 213,639
_0210
Position (kb) 210
211
212 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 209.624 kb on - strand, within Dsui_0208 at 209.767 kb on + strand at 209.767 kb on + strand, within Dsui_0208 at 209.767 kb on + strand, within Dsui_0208 at 209.775 kb on - strand, within Dsui_0208 at 209.775 kb on - strand, within Dsui_0208 at 209.787 kb on + strand, within Dsui_0208 at 209.847 kb on + strand, within Dsui_0208 at 209.847 kb on + strand, within Dsui_0208 at 209.855 kb on - strand, within Dsui_0208 at 209.933 kb on - strand, within Dsui_0208 at 209.981 kb on - strand, within Dsui_0208 at 210.023 kb on + strand, within Dsui_0208 at 210.030 kb on - strand, within Dsui_0208 at 210.123 kb on - strand, within Dsui_0208 at 210.138 kb on - strand, within Dsui_0208 at 210.363 kb on - strand at 210.432 kb on + strand at 210.452 kb on + strand at 210.477 kb on - strand at 210.704 kb on + strand, within Dsui_0209 at 210.832 kb on + strand, within Dsui_0209 at 210.971 kb on + strand at 211.087 kb on + strand, within Dsui_0209 at 211.258 kb on - strand, within Dsui_0209 at 211.304 kb on + strand, within Dsui_0209 at 211.462 kb on - strand, within Dsui_0209 at 211.671 kb on - strand at 211.700 kb on - strand at 211.899 kb on + strand, within Dsui_0210 at 211.907 kb on - strand, within Dsui_0210 at 211.965 kb on + strand at 211.965 kb on + strand at 211.965 kb on + strand at 211.973 kb on - strand, within Dsui_0210 at 211.973 kb on - strand, within Dsui_0210 at 211.973 kb on - strand at 211.973 kb on - strand, within Dsui_0210 at 211.988 kb on - strand at 212.154 kb on - strand at 212.205 kb on + strand, within Dsui_0210 at 212.223 kb on - strand at 212.223 kb on - strand at 212.223 kb on - strand, within Dsui_0210 at 212.328 kb on + strand, within Dsui_0210 at 212.349 kb on + strand, within Dsui_0210 at 212.398 kb on - strand at 212.509 kb on - strand, within Dsui_0210 at 212.621 kb on + strand, within Dsui_0210
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrate 50 mM remove 209,624 - Dsui_0208 0.74 +0.5 209,767 + -0.5 209,767 + Dsui_0208 0.78 -3.1 209,767 + Dsui_0208 0.78 -1.1 209,775 - Dsui_0208 0.79 -2.1 209,775 - Dsui_0208 0.79 +0.5 209,787 + Dsui_0208 0.79 -1.3 209,847 + Dsui_0208 0.81 +0.5 209,847 + Dsui_0208 0.81 +0.5 209,855 - Dsui_0208 0.81 -1.5 209,933 - Dsui_0208 0.83 +0.5 209,981 - Dsui_0208 0.84 +0.5 210,023 + Dsui_0208 0.85 -1.8 210,030 - Dsui_0208 0.86 -1.1 210,123 - Dsui_0208 0.88 -1.8 210,138 - Dsui_0208 0.89 -1.8 210,363 - +0.5 210,432 + -1.1 210,452 + +0.5 210,477 - +0.5 210,704 + Dsui_0209 0.15 -1.1 210,832 + Dsui_0209 0.27 -0.5 210,971 + -1.1 211,087 + Dsui_0209 0.50 -0.5 211,258 - Dsui_0209 0.66 -1.5 211,304 + Dsui_0209 0.70 -2.3 211,462 - Dsui_0209 0.85 -1.8 211,671 - -0.5 211,700 - +0.5 211,899 + Dsui_0210 0.13 -0.5 211,907 - Dsui_0210 0.14 -1.1 211,965 + +0.5 211,965 + +0.5 211,965 + -1.1 211,973 - Dsui_0210 0.17 -1.8 211,973 - Dsui_0210 0.17 -2.7 211,973 - +0.5 211,973 - Dsui_0210 0.17 +0.5 211,988 - +0.5 212,154 - +0.5 212,205 + Dsui_0210 0.29 -0.5 212,223 - +0.5 212,223 - +0.5 212,223 - Dsui_0210 0.30 +0.5 212,328 + Dsui_0210 0.35 -1.1 212,349 + Dsui_0210 0.36 -1.5 212,398 - +0.5 212,509 - Dsui_0210 0.44 +0.5 212,621 + Dsui_0210 0.49 -0.5
Or see this region's nucleotide sequence