Experiment: L-Tryptophan (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_17205 and AO353_17210 are separated by 39 nucleotides AO353_17210 and AO353_17215 are separated by 1 nucleotides AO353_17215 and AO353_17220 are separated by 254 nucleotides
AO353_17205: AO353_17205 - beta-ketoadipyl CoA thiolase, at 3,804,350 to 3,805,552
_17205
AO353_17210: AO353_17210 - protocatechuate 3,4-dioxygenase, at 3,805,592 to 3,806,296
_17210
AO353_17215: AO353_17215 - protocatechuate 3,4-dioxygenase, at 3,806,298 to 3,806,864
_17215
AO353_17220: AO353_17220 - alpha-ketoglutarate permease, at 3,807,119 to 3,808,414
_17220
Position (kb)
3805
3806
3807 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3804.822 kb on - strand, within AO353_17205 at 3804.822 kb on - strand, within AO353_17205 at 3804.869 kb on + strand, within AO353_17205 at 3805.566 kb on + strand at 3805.643 kb on + strand at 3805.643 kb on + strand at 3805.643 kb on + strand at 3805.644 kb on - strand at 3805.644 kb on - strand at 3805.658 kb on + strand at 3805.726 kb on + strand, within AO353_17210 at 3805.870 kb on - strand, within AO353_17210 at 3805.904 kb on + strand, within AO353_17210 at 3805.905 kb on - strand, within AO353_17210 at 3805.992 kb on - strand, within AO353_17210 at 3806.022 kb on - strand, within AO353_17210 at 3806.063 kb on - strand, within AO353_17210 at 3806.117 kb on + strand, within AO353_17210 at 3806.117 kb on + strand, within AO353_17210 at 3806.117 kb on + strand, within AO353_17210 at 3806.117 kb on + strand, within AO353_17210 at 3806.117 kb on + strand, within AO353_17210 at 3806.117 kb on + strand, within AO353_17210 at 3806.117 kb on + strand, within AO353_17210 at 3806.117 kb on + strand, within AO353_17210 at 3806.117 kb on + strand, within AO353_17210 at 3806.117 kb on + strand, within AO353_17210 at 3806.117 kb on + strand, within AO353_17210 at 3806.118 kb on - strand, within AO353_17210 at 3806.118 kb on - strand, within AO353_17210 at 3806.118 kb on - strand, within AO353_17210 at 3806.118 kb on - strand, within AO353_17210 at 3806.118 kb on - strand, within AO353_17210 at 3806.118 kb on - strand, within AO353_17210 at 3806.118 kb on - strand, within AO353_17210 at 3806.118 kb on - strand, within AO353_17210 at 3806.118 kb on - strand, within AO353_17210 at 3806.145 kb on - strand, within AO353_17210 at 3806.145 kb on - strand, within AO353_17210 at 3806.145 kb on - strand, within AO353_17210 at 3806.156 kb on + strand, within AO353_17210 at 3806.156 kb on + strand, within AO353_17210 at 3806.156 kb on + strand, within AO353_17210 at 3806.157 kb on - strand, within AO353_17210 at 3806.157 kb on - strand, within AO353_17210 at 3806.157 kb on - strand, within AO353_17210 at 3806.157 kb on - strand, within AO353_17210 at 3806.174 kb on - strand, within AO353_17210 at 3806.232 kb on - strand at 3806.232 kb on - strand at 3806.294 kb on + strand at 3806.294 kb on + strand at 3806.294 kb on + strand at 3806.295 kb on - strand at 3806.295 kb on - strand at 3806.295 kb on - strand at 3806.295 kb on - strand at 3806.295 kb on - strand at 3806.295 kb on - strand at 3806.295 kb on - strand at 3806.295 kb on - strand at 3806.295 kb on - strand at 3806.295 kb on - strand at 3806.295 kb on - strand at 3806.337 kb on + strand at 3806.337 kb on + strand at 3806.337 kb on + strand at 3806.340 kb on + strand at 3806.340 kb on + strand at 3806.341 kb on - strand at 3806.341 kb on - strand at 3806.341 kb on - strand at 3806.341 kb on - strand at 3806.341 kb on - strand at 3806.496 kb on + strand, within AO353_17215 at 3806.496 kb on + strand, within AO353_17215 at 3806.496 kb on + strand, within AO353_17215 at 3806.496 kb on + strand, within AO353_17215 at 3806.496 kb on + strand, within AO353_17215 at 3806.496 kb on + strand, within AO353_17215 at 3806.496 kb on + strand, within AO353_17215 at 3806.496 kb on + strand, within AO353_17215 at 3806.496 kb on + strand, within AO353_17215 at 3806.497 kb on - strand, within AO353_17215 at 3806.497 kb on - strand, within AO353_17215 at 3806.497 kb on - strand, within AO353_17215 at 3806.497 kb on - strand, within AO353_17215 at 3806.497 kb on - strand, within AO353_17215 at 3806.497 kb on - strand, within AO353_17215 at 3806.497 kb on - strand, within AO353_17215 at 3806.497 kb on - strand, within AO353_17215 at 3806.497 kb on - strand, within AO353_17215 at 3806.497 kb on - strand, within AO353_17215 at 3806.497 kb on - strand, within AO353_17215 at 3806.497 kb on - strand, within AO353_17215 at 3806.497 kb on - strand, within AO353_17215 at 3806.497 kb on - strand, within AO353_17215 at 3806.497 kb on - strand, within AO353_17215 at 3806.497 kb on - strand, within AO353_17215 at 3806.497 kb on - strand, within AO353_17215 at 3806.703 kb on + strand, within AO353_17215 at 3806.703 kb on + strand, within AO353_17215 at 3806.703 kb on + strand, within AO353_17215 at 3806.704 kb on - strand, within AO353_17215 at 3806.931 kb on - strand at 3806.931 kb on - strand at 3806.964 kb on + strand at 3806.965 kb on - strand at 3806.965 kb on - strand at 3806.966 kb on + strand at 3806.966 kb on + strand at 3806.966 kb on + strand at 3806.966 kb on + strand at 3806.966 kb on + strand at 3806.966 kb on + strand at 3806.966 kb on + strand at 3806.967 kb on - strand at 3806.967 kb on - strand at 3806.967 kb on - strand at 3806.967 kb on - strand at 3806.967 kb on - strand at 3806.967 kb on - strand at 3806.967 kb on - strand at 3806.967 kb on - strand at 3806.967 kb on - strand at 3806.967 kb on - strand at 3806.987 kb on - strand at 3807.035 kb on - strand at 3807.080 kb on + strand at 3807.080 kb on + strand at 3807.080 kb on + strand at 3807.081 kb on - strand at 3807.081 kb on - strand at 3807.081 kb on - strand at 3807.081 kb on - strand at 3807.081 kb on - strand at 3807.081 kb on - strand at 3807.081 kb on - strand at 3807.081 kb on - strand at 3807.086 kb on + strand at 3807.086 kb on + strand at 3807.086 kb on + strand at 3807.087 kb on - strand at 3807.087 kb on - strand at 3807.129 kb on + strand at 3807.140 kb on + strand at 3807.140 kb on + strand at 3807.140 kb on + strand at 3807.140 kb on + strand at 3807.140 kb on + strand at 3807.141 kb on - strand at 3807.141 kb on - strand at 3807.221 kb on + strand at 3807.221 kb on + strand at 3807.221 kb on + strand at 3807.221 kb on + strand at 3807.221 kb on + strand at 3807.221 kb on + strand at 3807.221 kb on + strand at 3807.221 kb on + strand at 3807.221 kb on + strand at 3807.222 kb on - strand at 3807.222 kb on - strand at 3807.222 kb on - strand at 3807.222 kb on - strand at 3807.222 kb on - strand at 3807.222 kb on - strand at 3807.222 kb on - strand at 3807.222 kb on - strand at 3807.222 kb on - strand at 3807.222 kb on - strand at 3807.227 kb on + strand at 3807.227 kb on + strand at 3807.228 kb on - strand at 3807.245 kb on + strand at 3807.245 kb on + strand at 3807.246 kb on - strand at 3807.246 kb on - strand at 3807.246 kb on - strand at 3807.246 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (N) remove 3,804,822 - AO353_17205 0.39 +0.9 3,804,822 - AO353_17205 0.39 +0.2 3,804,869 + AO353_17205 0.43 +0.0 3,805,566 + -2.1 3,805,643 + +0.1 3,805,643 + -0.5 3,805,643 + -0.7 3,805,644 - -0.6 3,805,644 - -0.7 3,805,658 + +0.8 3,805,726 + AO353_17210 0.19 -1.3 3,805,870 - AO353_17210 0.39 +0.7 3,805,904 + AO353_17210 0.44 +0.0 3,805,905 - AO353_17210 0.44 -1.6 3,805,992 - AO353_17210 0.57 +1.6 3,806,022 - AO353_17210 0.61 -0.1 3,806,063 - AO353_17210 0.67 +0.4 3,806,117 + AO353_17210 0.74 +0.5 3,806,117 + AO353_17210 0.74 +0.3 3,806,117 + AO353_17210 0.74 -1.0 3,806,117 + AO353_17210 0.74 -0.9 3,806,117 + AO353_17210 0.74 -0.7 3,806,117 + AO353_17210 0.74 +1.9 3,806,117 + AO353_17210 0.74 +0.6 3,806,117 + AO353_17210 0.74 +0.3 3,806,117 + AO353_17210 0.74 -1.5 3,806,117 + AO353_17210 0.74 -0.0 3,806,117 + AO353_17210 0.74 +0.2 3,806,118 - AO353_17210 0.75 -2.3 3,806,118 - AO353_17210 0.75 +0.6 3,806,118 - AO353_17210 0.75 +0.0 3,806,118 - AO353_17210 0.75 -1.1 3,806,118 - AO353_17210 0.75 +1.3 3,806,118 - AO353_17210 0.75 -0.6 3,806,118 - AO353_17210 0.75 +0.7 3,806,118 - AO353_17210 0.75 -0.5 3,806,118 - AO353_17210 0.75 +1.6 3,806,145 - AO353_17210 0.78 -0.1 3,806,145 - AO353_17210 0.78 +0.2 3,806,145 - AO353_17210 0.78 +0.3 3,806,156 + AO353_17210 0.80 +0.3 3,806,156 + AO353_17210 0.80 -0.2 3,806,156 + AO353_17210 0.80 -0.2 3,806,157 - AO353_17210 0.80 -2.2 3,806,157 - AO353_17210 0.80 -0.4 3,806,157 - AO353_17210 0.80 -0.7 3,806,157 - AO353_17210 0.80 +0.3 3,806,174 - AO353_17210 0.83 +0.1 3,806,232 - +0.3 3,806,232 - +0.1 3,806,294 + +0.6 3,806,294 + +0.1 3,806,294 + +0.9 3,806,295 - +0.1 3,806,295 - -0.3 3,806,295 - +0.1 3,806,295 - -0.1 3,806,295 - +0.8 3,806,295 - -1.0 3,806,295 - +0.8 3,806,295 - +0.2 3,806,295 - -1.3 3,806,295 - +0.5 3,806,295 - +1.6 3,806,337 + +0.3 3,806,337 + -0.1 3,806,337 + +1.2 3,806,340 + +0.3 3,806,340 + +0.5 3,806,341 - -0.7 3,806,341 - +2.3 3,806,341 - +2.1 3,806,341 - -1.2 3,806,341 - -0.6 3,806,496 + AO353_17215 0.35 +0.7 3,806,496 + AO353_17215 0.35 -1.9 3,806,496 + AO353_17215 0.35 -1.6 3,806,496 + AO353_17215 0.35 -1.3 3,806,496 + AO353_17215 0.35 -2.0 3,806,496 + AO353_17215 0.35 +1.0 3,806,496 + AO353_17215 0.35 -0.1 3,806,496 + AO353_17215 0.35 -1.4 3,806,496 + AO353_17215 0.35 -0.9 3,806,497 - AO353_17215 0.35 -0.4 3,806,497 - AO353_17215 0.35 +0.5 3,806,497 - AO353_17215 0.35 -0.0 3,806,497 - AO353_17215 0.35 -0.1 3,806,497 - AO353_17215 0.35 +1.3 3,806,497 - AO353_17215 0.35 -0.5 3,806,497 - AO353_17215 0.35 -1.0 3,806,497 - AO353_17215 0.35 -0.7 3,806,497 - AO353_17215 0.35 -0.0 3,806,497 - AO353_17215 0.35 -0.2 3,806,497 - AO353_17215 0.35 -1.0 3,806,497 - AO353_17215 0.35 +0.7 3,806,497 - AO353_17215 0.35 +0.6 3,806,497 - AO353_17215 0.35 +2.6 3,806,497 - AO353_17215 0.35 -1.1 3,806,497 - AO353_17215 0.35 +0.2 3,806,497 - AO353_17215 0.35 -1.0 3,806,703 + AO353_17215 0.71 +0.6 3,806,703 + AO353_17215 0.71 +1.5 3,806,703 + AO353_17215 0.71 +1.1 3,806,704 - AO353_17215 0.72 +0.3 3,806,931 - -0.7 3,806,931 - -1.9 3,806,964 + +1.2 3,806,965 - +0.1 3,806,965 - -1.1 3,806,966 + +0.1 3,806,966 + +0.5 3,806,966 + -0.1 3,806,966 + -0.6 3,806,966 + -0.2 3,806,966 + -0.5 3,806,966 + -1.2 3,806,967 - -0.1 3,806,967 - +0.3 3,806,967 - +0.5 3,806,967 - -1.2 3,806,967 - -2.3 3,806,967 - +0.3 3,806,967 - +0.0 3,806,967 - -0.9 3,806,967 - -0.8 3,806,967 - +0.2 3,806,987 - +0.1 3,807,035 - -2.5 3,807,080 + +1.5 3,807,080 + -1.3 3,807,080 + -0.7 3,807,081 - -0.9 3,807,081 - -0.7 3,807,081 - -1.1 3,807,081 - -0.7 3,807,081 - +0.2 3,807,081 - -1.2 3,807,081 - -2.2 3,807,081 - -0.8 3,807,086 + -0.5 3,807,086 + +0.9 3,807,086 + +1.7 3,807,087 - -1.9 3,807,087 - -0.5 3,807,129 + +0.1 3,807,140 + +0.3 3,807,140 + +0.2 3,807,140 + -0.5 3,807,140 + -0.3 3,807,140 + +0.8 3,807,141 - -0.5 3,807,141 - -2.0 3,807,221 + -0.5 3,807,221 + +0.8 3,807,221 + +0.4 3,807,221 + -1.0 3,807,221 + -0.4 3,807,221 + +0.9 3,807,221 + +0.3 3,807,221 + +0.8 3,807,221 + +0.2 3,807,222 - -0.8 3,807,222 - -1.7 3,807,222 - -0.1 3,807,222 - +0.8 3,807,222 - +0.9 3,807,222 - -0.7 3,807,222 - -0.3 3,807,222 - -0.0 3,807,222 - -0.4 3,807,222 - -1.5 3,807,227 + -0.1 3,807,227 + -0.8 3,807,228 - -1.0 3,807,245 + -1.1 3,807,245 + +0.4 3,807,246 - -1.5 3,807,246 - -1.5 3,807,246 - +0.9 3,807,246 - -1.3
Or see this region's nucleotide sequence