Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_17210

Experiment: L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_17205 and AO353_17210 are separated by 39 nucleotidesAO353_17210 and AO353_17215 are separated by 1 nucleotidesAO353_17215 and AO353_17220 are separated by 254 nucleotides AO353_17205: AO353_17205 - beta-ketoadipyl CoA thiolase, at 3,804,350 to 3,805,552 _17205 AO353_17210: AO353_17210 - protocatechuate 3,4-dioxygenase, at 3,805,592 to 3,806,296 _17210 AO353_17215: AO353_17215 - protocatechuate 3,4-dioxygenase, at 3,806,298 to 3,806,864 _17215 AO353_17220: AO353_17220 - alpha-ketoglutarate permease, at 3,807,119 to 3,808,414 _17220 Position (kb) 3805 3806 3807Strain fitness (log2 ratio) -2 -1 0 1 2at 3804.822 kb on - strand, within AO353_17205at 3804.822 kb on - strand, within AO353_17205at 3804.869 kb on + strand, within AO353_17205at 3805.566 kb on + strandat 3805.643 kb on + strandat 3805.643 kb on + strandat 3805.643 kb on + strandat 3805.644 kb on - strandat 3805.644 kb on - strandat 3805.658 kb on + strandat 3805.726 kb on + strand, within AO353_17210at 3805.870 kb on - strand, within AO353_17210at 3805.904 kb on + strand, within AO353_17210at 3805.905 kb on - strand, within AO353_17210at 3805.992 kb on - strand, within AO353_17210at 3806.022 kb on - strand, within AO353_17210at 3806.063 kb on - strand, within AO353_17210at 3806.117 kb on + strand, within AO353_17210at 3806.117 kb on + strand, within AO353_17210at 3806.117 kb on + strand, within AO353_17210at 3806.117 kb on + strand, within AO353_17210at 3806.117 kb on + strand, within AO353_17210at 3806.117 kb on + strand, within AO353_17210at 3806.117 kb on + strand, within AO353_17210at 3806.117 kb on + strand, within AO353_17210at 3806.117 kb on + strand, within AO353_17210at 3806.117 kb on + strand, within AO353_17210at 3806.117 kb on + strand, within AO353_17210at 3806.118 kb on - strand, within AO353_17210at 3806.118 kb on - strand, within AO353_17210at 3806.118 kb on - strand, within AO353_17210at 3806.118 kb on - strand, within AO353_17210at 3806.118 kb on - strand, within AO353_17210at 3806.118 kb on - strand, within AO353_17210at 3806.118 kb on - strand, within AO353_17210at 3806.118 kb on - strand, within AO353_17210at 3806.118 kb on - strand, within AO353_17210at 3806.145 kb on - strand, within AO353_17210at 3806.145 kb on - strand, within AO353_17210at 3806.145 kb on - strand, within AO353_17210at 3806.156 kb on + strand, within AO353_17210at 3806.156 kb on + strand, within AO353_17210at 3806.156 kb on + strand, within AO353_17210at 3806.157 kb on - strand, within AO353_17210at 3806.157 kb on - strand, within AO353_17210at 3806.157 kb on - strand, within AO353_17210at 3806.157 kb on - strand, within AO353_17210at 3806.174 kb on - strand, within AO353_17210at 3806.232 kb on - strandat 3806.232 kb on - strandat 3806.294 kb on + strandat 3806.294 kb on + strandat 3806.294 kb on + strandat 3806.295 kb on - strandat 3806.295 kb on - strandat 3806.295 kb on - strandat 3806.295 kb on - strandat 3806.295 kb on - strandat 3806.295 kb on - strandat 3806.295 kb on - strandat 3806.295 kb on - strandat 3806.295 kb on - strandat 3806.295 kb on - strandat 3806.295 kb on - strandat 3806.337 kb on + strandat 3806.337 kb on + strandat 3806.337 kb on + strandat 3806.340 kb on + strandat 3806.340 kb on + strandat 3806.341 kb on - strandat 3806.341 kb on - strandat 3806.341 kb on - strandat 3806.341 kb on - strandat 3806.341 kb on - strandat 3806.496 kb on + strand, within AO353_17215at 3806.496 kb on + strand, within AO353_17215at 3806.496 kb on + strand, within AO353_17215at 3806.496 kb on + strand, within AO353_17215at 3806.496 kb on + strand, within AO353_17215at 3806.496 kb on + strand, within AO353_17215at 3806.496 kb on + strand, within AO353_17215at 3806.496 kb on + strand, within AO353_17215at 3806.496 kb on + strand, within AO353_17215at 3806.497 kb on - strand, within AO353_17215at 3806.497 kb on - strand, within AO353_17215at 3806.497 kb on - strand, within AO353_17215at 3806.497 kb on - strand, within AO353_17215at 3806.497 kb on - strand, within AO353_17215at 3806.497 kb on - strand, within AO353_17215at 3806.497 kb on - strand, within AO353_17215at 3806.497 kb on - strand, within AO353_17215at 3806.497 kb on - strand, within AO353_17215at 3806.497 kb on - strand, within AO353_17215at 3806.497 kb on - strand, within AO353_17215at 3806.497 kb on - strand, within AO353_17215at 3806.497 kb on - strand, within AO353_17215at 3806.497 kb on - strand, within AO353_17215at 3806.497 kb on - strand, within AO353_17215at 3806.497 kb on - strand, within AO353_17215at 3806.497 kb on - strand, within AO353_17215at 3806.703 kb on + strand, within AO353_17215at 3806.703 kb on + strand, within AO353_17215at 3806.703 kb on + strand, within AO353_17215at 3806.704 kb on - strand, within AO353_17215at 3806.931 kb on - strandat 3806.931 kb on - strandat 3806.964 kb on + strandat 3806.965 kb on - strandat 3806.965 kb on - strandat 3806.966 kb on + strandat 3806.966 kb on + strandat 3806.966 kb on + strandat 3806.966 kb on + strandat 3806.966 kb on + strandat 3806.966 kb on + strandat 3806.966 kb on + strandat 3806.967 kb on - strandat 3806.967 kb on - strandat 3806.967 kb on - strandat 3806.967 kb on - strandat 3806.967 kb on - strandat 3806.967 kb on - strandat 3806.967 kb on - strandat 3806.967 kb on - strandat 3806.967 kb on - strandat 3806.967 kb on - strandat 3806.987 kb on - strandat 3807.035 kb on - strandat 3807.080 kb on + strandat 3807.080 kb on + strandat 3807.080 kb on + strandat 3807.081 kb on - strandat 3807.081 kb on - strandat 3807.081 kb on - strandat 3807.081 kb on - strandat 3807.081 kb on - strandat 3807.081 kb on - strandat 3807.081 kb on - strandat 3807.081 kb on - strandat 3807.086 kb on + strandat 3807.086 kb on + strandat 3807.086 kb on + strandat 3807.087 kb on - strandat 3807.087 kb on - strandat 3807.129 kb on + strandat 3807.140 kb on + strandat 3807.140 kb on + strandat 3807.140 kb on + strandat 3807.140 kb on + strandat 3807.140 kb on + strandat 3807.141 kb on - strandat 3807.141 kb on - strandat 3807.221 kb on + strandat 3807.221 kb on + strandat 3807.221 kb on + strandat 3807.221 kb on + strandat 3807.221 kb on + strandat 3807.221 kb on + strandat 3807.221 kb on + strandat 3807.221 kb on + strandat 3807.221 kb on + strandat 3807.222 kb on - strandat 3807.222 kb on - strandat 3807.222 kb on - strandat 3807.222 kb on - strandat 3807.222 kb on - strandat 3807.222 kb on - strandat 3807.222 kb on - strandat 3807.222 kb on - strandat 3807.222 kb on - strandat 3807.222 kb on - strandat 3807.227 kb on + strandat 3807.227 kb on + strandat 3807.228 kb on - strandat 3807.245 kb on + strandat 3807.245 kb on + strandat 3807.246 kb on - strandat 3807.246 kb on - strandat 3807.246 kb on - strandat 3807.246 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (N)
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3,804,822 - AO353_17205 0.39 +0.9
3,804,822 - AO353_17205 0.39 +0.2
3,804,869 + AO353_17205 0.43 +0.0
3,805,566 + -2.1
3,805,643 + +0.1
3,805,643 + -0.5
3,805,643 + -0.7
3,805,644 - -0.6
3,805,644 - -0.7
3,805,658 + +0.8
3,805,726 + AO353_17210 0.19 -1.3
3,805,870 - AO353_17210 0.39 +0.7
3,805,904 + AO353_17210 0.44 +0.0
3,805,905 - AO353_17210 0.44 -1.6
3,805,992 - AO353_17210 0.57 +1.6
3,806,022 - AO353_17210 0.61 -0.1
3,806,063 - AO353_17210 0.67 +0.4
3,806,117 + AO353_17210 0.74 +0.5
3,806,117 + AO353_17210 0.74 +0.3
3,806,117 + AO353_17210 0.74 -1.0
3,806,117 + AO353_17210 0.74 -0.9
3,806,117 + AO353_17210 0.74 -0.7
3,806,117 + AO353_17210 0.74 +1.9
3,806,117 + AO353_17210 0.74 +0.6
3,806,117 + AO353_17210 0.74 +0.3
3,806,117 + AO353_17210 0.74 -1.5
3,806,117 + AO353_17210 0.74 -0.0
3,806,117 + AO353_17210 0.74 +0.2
3,806,118 - AO353_17210 0.75 -2.3
3,806,118 - AO353_17210 0.75 +0.6
3,806,118 - AO353_17210 0.75 +0.0
3,806,118 - AO353_17210 0.75 -1.1
3,806,118 - AO353_17210 0.75 +1.3
3,806,118 - AO353_17210 0.75 -0.6
3,806,118 - AO353_17210 0.75 +0.7
3,806,118 - AO353_17210 0.75 -0.5
3,806,118 - AO353_17210 0.75 +1.6
3,806,145 - AO353_17210 0.78 -0.1
3,806,145 - AO353_17210 0.78 +0.2
3,806,145 - AO353_17210 0.78 +0.3
3,806,156 + AO353_17210 0.80 +0.3
3,806,156 + AO353_17210 0.80 -0.2
3,806,156 + AO353_17210 0.80 -0.2
3,806,157 - AO353_17210 0.80 -2.2
3,806,157 - AO353_17210 0.80 -0.4
3,806,157 - AO353_17210 0.80 -0.7
3,806,157 - AO353_17210 0.80 +0.3
3,806,174 - AO353_17210 0.83 +0.1
3,806,232 - +0.3
3,806,232 - +0.1
3,806,294 + +0.6
3,806,294 + +0.1
3,806,294 + +0.9
3,806,295 - +0.1
3,806,295 - -0.3
3,806,295 - +0.1
3,806,295 - -0.1
3,806,295 - +0.8
3,806,295 - -1.0
3,806,295 - +0.8
3,806,295 - +0.2
3,806,295 - -1.3
3,806,295 - +0.5
3,806,295 - +1.6
3,806,337 + +0.3
3,806,337 + -0.1
3,806,337 + +1.2
3,806,340 + +0.3
3,806,340 + +0.5
3,806,341 - -0.7
3,806,341 - +2.3
3,806,341 - +2.1
3,806,341 - -1.2
3,806,341 - -0.6
3,806,496 + AO353_17215 0.35 +0.7
3,806,496 + AO353_17215 0.35 -1.9
3,806,496 + AO353_17215 0.35 -1.6
3,806,496 + AO353_17215 0.35 -1.3
3,806,496 + AO353_17215 0.35 -2.0
3,806,496 + AO353_17215 0.35 +1.0
3,806,496 + AO353_17215 0.35 -0.1
3,806,496 + AO353_17215 0.35 -1.4
3,806,496 + AO353_17215 0.35 -0.9
3,806,497 - AO353_17215 0.35 -0.4
3,806,497 - AO353_17215 0.35 +0.5
3,806,497 - AO353_17215 0.35 -0.0
3,806,497 - AO353_17215 0.35 -0.1
3,806,497 - AO353_17215 0.35 +1.3
3,806,497 - AO353_17215 0.35 -0.5
3,806,497 - AO353_17215 0.35 -1.0
3,806,497 - AO353_17215 0.35 -0.7
3,806,497 - AO353_17215 0.35 -0.0
3,806,497 - AO353_17215 0.35 -0.2
3,806,497 - AO353_17215 0.35 -1.0
3,806,497 - AO353_17215 0.35 +0.7
3,806,497 - AO353_17215 0.35 +0.6
3,806,497 - AO353_17215 0.35 +2.6
3,806,497 - AO353_17215 0.35 -1.1
3,806,497 - AO353_17215 0.35 +0.2
3,806,497 - AO353_17215 0.35 -1.0
3,806,703 + AO353_17215 0.71 +0.6
3,806,703 + AO353_17215 0.71 +1.5
3,806,703 + AO353_17215 0.71 +1.1
3,806,704 - AO353_17215 0.72 +0.3
3,806,931 - -0.7
3,806,931 - -1.9
3,806,964 + +1.2
3,806,965 - +0.1
3,806,965 - -1.1
3,806,966 + +0.1
3,806,966 + +0.5
3,806,966 + -0.1
3,806,966 + -0.6
3,806,966 + -0.2
3,806,966 + -0.5
3,806,966 + -1.2
3,806,967 - -0.1
3,806,967 - +0.3
3,806,967 - +0.5
3,806,967 - -1.2
3,806,967 - -2.3
3,806,967 - +0.3
3,806,967 - +0.0
3,806,967 - -0.9
3,806,967 - -0.8
3,806,967 - +0.2
3,806,987 - +0.1
3,807,035 - -2.5
3,807,080 + +1.5
3,807,080 + -1.3
3,807,080 + -0.7
3,807,081 - -0.9
3,807,081 - -0.7
3,807,081 - -1.1
3,807,081 - -0.7
3,807,081 - +0.2
3,807,081 - -1.2
3,807,081 - -2.2
3,807,081 - -0.8
3,807,086 + -0.5
3,807,086 + +0.9
3,807,086 + +1.7
3,807,087 - -1.9
3,807,087 - -0.5
3,807,129 + +0.1
3,807,140 + +0.3
3,807,140 + +0.2
3,807,140 + -0.5
3,807,140 + -0.3
3,807,140 + +0.8
3,807,141 - -0.5
3,807,141 - -2.0
3,807,221 + -0.5
3,807,221 + +0.8
3,807,221 + +0.4
3,807,221 + -1.0
3,807,221 + -0.4
3,807,221 + +0.9
3,807,221 + +0.3
3,807,221 + +0.8
3,807,221 + +0.2
3,807,222 - -0.8
3,807,222 - -1.7
3,807,222 - -0.1
3,807,222 - +0.8
3,807,222 - +0.9
3,807,222 - -0.7
3,807,222 - -0.3
3,807,222 - -0.0
3,807,222 - -0.4
3,807,222 - -1.5
3,807,227 + -0.1
3,807,227 + -0.8
3,807,228 - -1.0
3,807,245 + -1.1
3,807,245 + +0.4
3,807,246 - -1.5
3,807,246 - -1.5
3,807,246 - +0.9
3,807,246 - -1.3

Or see this region's nucleotide sequence