Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005107

Experiment: Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
1,355,852	+				+0.3
1,355,886	-				-1.2
1,355,948	+				-0.3
1,355,948	+				-1.6
1,355,948	+				-0.5
1,355,948	+				+0.3
1,355,948	+				-0.2
1,355,949	-				-1.6
1,355,985	-		ABIE53_005106	0.14	+0.3
1,355,985	-		ABIE53_005106	0.14	+1.2
1,356,222	-		ABIE53_005106	0.48	+2.5
1,356,222	-		ABIE53_005106	0.48	+1.2
1,356,222	-		ABIE53_005106	0.48	-2.7
1,356,249	+		ABIE53_005106	0.52	+1.5
1,356,263	+		ABIE53_005106	0.54	+2.9
1,356,263	+		ABIE53_005106	0.54	-0.2
1,356,263	+		ABIE53_005106	0.54	+0.5
1,356,263	+		ABIE53_005106	0.54	+0.3
1,356,264	-		ABIE53_005106	0.54	-0.2
1,356,264	-		ABIE53_005106	0.54	-0.2
1,356,264	-		ABIE53_005106	0.54	-1.5
1,356,264	-		ABIE53_005106	0.54	-0.2
1,356,317	+		ABIE53_005106	0.61	-1.5
1,356,317	+		ABIE53_005106	0.61	+1.3
1,356,317	+		ABIE53_005106	0.61	+0.0
1,356,317	+		ABIE53_005106	0.61	-0.7
1,356,456	+		ABIE53_005106	0.81	-3.0
1,356,456	+		ABIE53_005106	0.81	-1.2
1,356,456	+		ABIE53_005106	0.81	+0.0
1,356,456	+		ABIE53_005106	0.81	-0.5
1,356,456	+		ABIE53_005106	0.81	+0.4
1,356,456	+		ABIE53_005106	0.81	-1.0
1,356,456	+		ABIE53_005106	0.81	-2.4
1,356,456	+		ABIE53_005106	0.81	-0.4
1,356,456	+		ABIE53_005106	0.81	+4.7
1,356,456	+		ABIE53_005106	0.81	+3.1
1,356,456	+		ABIE53_005106	0.81	-0.1
1,356,457	-		ABIE53_005106	0.81	-2.4
1,356,457	-		ABIE53_005106	0.81	-2.7
1,356,457	-		ABIE53_005106	0.81	-0.3
1,356,457	-		ABIE53_005106	0.81	-0.4
1,356,457	-		ABIE53_005106	0.81	+2.9
1,356,478	+		ABIE53_005106	0.84	+0.3
1,356,478	+		ABIE53_005106	0.84	-2.5
1,356,478	+		ABIE53_005106	0.84	+5.7
1,356,478	+		ABIE53_005106	0.84	+1.3
1,356,479	-		ABIE53_005106	0.84	+1.3
1,356,479	-		ABIE53_005106	0.84	+1.8
1,356,634	+				+0.9
1,356,634	+				-0.9
1,356,635	-				+0.8
1,356,635	-				+3.2
1,356,635	-				-1.0
1,356,635	-				-1.7
1,356,635	-				-0.2
1,356,669	+				-0.4
1,356,670	-				-0.5
1,356,670	-				-0.7
1,356,769	+				-0.5
1,356,769	+				-0.1
1,356,769	+				+0.6
1,356,769	+				-1.2
1,356,769	+				-1.6
1,356,769	+				-0.7
1,356,769	+				-0.1
1,356,769	+				-0.2
1,356,769	+				-0.5
1,356,769	+				+0.3
1,356,769	+				+0.8
1,356,770	-				-0.2
1,356,770	-				+0.0
1,356,770	-				-0.7
1,356,770	-				+1.0
1,356,770	-				-0.5
1,356,770	-				-0.4
1,356,770	-				+0.7
1,356,770	-				-1.1
1,356,770	-				-0.2
1,356,770	-				-1.2
1,356,770	-				-0.7
1,356,770	-				-0.2
1,356,770	-				-2.6
1,356,773	+				+1.2
1,356,773	+				+0.0
1,356,773	+				+1.8
1,356,773	+				+0.1
1,356,773	+				+2.3
1,356,773	+				-1.2
1,356,773	+				-1.2
1,356,773	+				+0.6
1,356,773	+				-0.4
1,356,773	+				+0.0
1,356,773	+				-2.0
1,356,773	+				-2.3
1,356,773	+				-1.5
1,356,773	+				-2.7
1,356,773	+				+1.3
1,356,773	+				-1.3
1,356,773	+				-1.5
1,356,773	+				+2.2
1,356,773	+				+0.8
1,356,773	+				-1.7
1,356,773	+				-1.1
1,356,773	+				-0.7
1,356,773	+				-0.7
1,356,773	+				-0.7
1,356,773	+				-0.0
1,356,773	+				+0.7
1,356,773	+				-1.5
1,356,773	+				-0.7
1,356,774	-				+0.8
1,356,774	-				+1.3
1,356,774	-				-0.2
1,356,774	-				-1.8
1,356,774	-				-1.2
1,356,774	-				-0.2
1,356,774	-				+0.1
1,356,774	-				-0.6
1,356,774	-				+0.3
1,356,774	-				-0.2
1,356,774	-				-2.0
1,356,774	-				-2.5
1,356,774	-				-0.1
1,356,774	-				-1.7
1,356,774	-				+1.3
1,356,774	-				+0.3
1,356,774	-				-0.7
1,356,774	-				+0.3
1,356,774	-				+0.9
1,356,774	-				-0.9
1,356,774	-				-1.5
1,356,827	+				-2.4
1,356,828	-				+0.3
1,356,828	-				-1.5
1,356,835	+				-1.7
1,356,946	+		ABIE53_005107	0.11	+0.3
1,356,946	+		ABIE53_005107	0.11	+0.2
1,356,946	+		ABIE53_005107	0.11	+0.9
1,356,946	+		ABIE53_005107	0.11	+0.3
1,356,946	+		ABIE53_005107	0.11	-0.2
1,356,946	+		ABIE53_005107	0.11	-2.3
1,356,947	-		ABIE53_005107	0.11	+0.1
1,356,947	-		ABIE53_005107	0.11	+0.9
1,356,947	-		ABIE53_005107	0.11	+1.5
1,356,947	-		ABIE53_005107	0.11	+0.6
1,356,947	-		ABIE53_005107	0.11	-1.0
1,356,947	-		ABIE53_005107	0.11	+1.3
1,356,947	-		ABIE53_005107	0.11	-0.2
1,357,007	-		ABIE53_005107	0.14	+0.6
1,357,008	+		ABIE53_005107	0.14	-0.7
1,357,008	+		ABIE53_005107	0.14	+2.2
1,357,008	+		ABIE53_005107	0.14	-2.0
1,357,008	+		ABIE53_005107	0.14	+3.7
1,357,008	+		ABIE53_005107	0.14	+0.6
1,357,061	+		ABIE53_005107	0.17	+0.3
1,357,062	-		ABIE53_005107	0.17	-0.5
1,357,113	+		ABIE53_005107	0.20	+1.8
1,357,113	+		ABIE53_005107	0.20	-1.5
1,357,114	-		ABIE53_005107	0.20	-3.5
1,357,185	+		ABIE53_005107	0.24	+0.2
1,357,185	+		ABIE53_005107	0.24	-1.4
1,357,185	+		ABIE53_005107	0.24	-0.5
1,357,185	+		ABIE53_005107	0.24	-0.1
1,357,185	+		ABIE53_005107	0.24	+1.1
1,357,185	+		ABIE53_005107	0.24	-0.2
1,357,185	+		ABIE53_005107	0.24	-0.2
1,357,185	+		ABIE53_005107	0.24	+1.3
1,357,185	+		ABIE53_005107	0.24	-0.2
1,357,185	+		ABIE53_005107	0.24	+0.2
1,357,186	-		ABIE53_005107	0.24	-0.6
1,357,186	-		ABIE53_005107	0.24	-1.3
1,357,186	-		ABIE53_005107	0.24	+0.1
1,357,186	-		ABIE53_005107	0.24	+0.1
1,357,186	-		ABIE53_005107	0.24	+0.2
1,357,186	-		ABIE53_005107	0.24	+3.3
1,357,186	-		ABIE53_005107	0.24	+1.5
1,357,186	-		ABIE53_005107	0.24	+0.3
1,357,200	+		ABIE53_005107	0.24	+2.8
1,357,200	+		ABIE53_005107	0.24	-0.6
1,357,201	-		ABIE53_005107	0.24	+1.2
1,357,201	-		ABIE53_005107	0.24	-0.8
1,357,201	-		ABIE53_005107	0.24	+1.0
1,357,209	+		ABIE53_005107	0.25	+1.3
1,357,209	+		ABIE53_005107	0.25	-1.6
1,357,209	+		ABIE53_005107	0.25	-1.0
1,357,209	+		ABIE53_005107	0.25	+0.1
1,357,210	-		ABIE53_005107	0.25	-1.2
1,357,363	+		ABIE53_005107	0.33	+0.3
1,357,363	+		ABIE53_005107	0.33	-0.9
1,357,363	+		ABIE53_005107	0.33	-1.3
1,357,364	-		ABIE53_005107	0.33	-1.7
1,357,364	-		ABIE53_005107	0.33	-1.0
1,357,364	-		ABIE53_005107	0.33	-0.1
1,357,504	+		ABIE53_005107	0.40	+2.3
1,357,504	+		ABIE53_005107	0.40	+0.6
1,357,504	+		ABIE53_005107	0.40	+0.0
1,357,552	-		ABIE53_005107	0.43	+2.3
1,357,710	+		ABIE53_005107	0.51	-0.7
1,357,711	-		ABIE53_005107	0.51	+0.7
1,357,711	-		ABIE53_005107	0.51	+0.3
1,357,711	-		ABIE53_005107	0.51	-2.6
1,357,713	+		ABIE53_005107	0.51	+1.6
1,357,714	-		ABIE53_005107	0.51	-1.5
1,357,813	+		ABIE53_005107	0.56	-0.7
1,357,814	+		ABIE53_005107	0.56	+1.3
1,357,814	+		ABIE53_005107	0.56	-1.0
1,357,814	+		ABIE53_005107	0.56	+0.6
1,357,814	+		ABIE53_005107	0.56	-0.1
1,357,814	+		ABIE53_005107	0.56	-1.5
1,357,814	+		ABIE53_005107	0.56	-1.1
1,357,815	-		ABIE53_005107	0.56	+1.6
1,357,815	-		ABIE53_005107	0.56	+0.8
1,357,815	-		ABIE53_005107	0.56	+0.1
1,357,815	-		ABIE53_005107	0.56	+1.6
1,357,815	-		ABIE53_005107	0.56	-0.7
1,357,815	-		ABIE53_005107	0.56	-2.1
1,357,912	-		ABIE53_005107	0.62	-0.1
1,357,912	-		ABIE53_005107	0.62	+0.6
1,357,939	-		ABIE53_005107	0.63	+2.2
1,358,119	-		ABIE53_005107	0.72	+3.1
1,358,177	+		ABIE53_005107	0.75	+0.8
1,358,177	+		ABIE53_005107	0.75	+0.1
1,358,177	+		ABIE53_005107	0.75	-0.7
1,358,177	+		ABIE53_005107	0.75	-1.7
1,358,177	+		ABIE53_005107	0.75	-0.3
1,358,178	-		ABIE53_005107	0.75	+1.6
1,358,178	-		ABIE53_005107	0.75	-0.5
1,358,484	-				-0.4
1,358,628	+				-1.0
1,358,629	-				+1.3
1,358,687	+				+0.0
1,358,687	+				-0.7
1,358,687	+				-1.2
1,358,687	+				+1.3
1,358,687	+				+0.3
1,358,688	-				+1.8
1,358,688	-				+0.8
1,358,688	-				-1.0
1,358,708	+				+1.3
1,358,708	+				+0.6
1,358,709	-				+0.2
1,358,709	-				+0.8
1,358,709	-				-0.8
1,358,716	+				-0.8
1,358,717	-				+0.3
1,358,718	-				-0.3
1,358,721	+				-1.0
1,358,839	-				-0.3
1,358,839	-				-1.0
1,358,991	-				-1.5
1,359,079	+				-0.2
1,359,080	-				+0.4
1,359,234	+		ABIE53_005108	0.32	+1.3
1,359,234	+		ABIE53_005108	0.32	+0.4
1,359,235	-		ABIE53_005108	0.32	-1.0
1,359,235	-		ABIE53_005108	0.32	-0.2
1,359,235	-		ABIE53_005108	0.32	+0.8
1,359,235	-		ABIE53_005108	0.32	+1.9
1,359,250	+		ABIE53_005108	0.35	+2.2
1,359,633	+				-0.4
1,359,633	+				-0.1
1,359,633	+				-1.0
1,359,634	-				+0.2