Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_746 and Pf1N1B4_747 are separated by 325 nucleotides Pf1N1B4_747 and Pf1N1B4_748 are separated by 234 nucleotides
Pf1N1B4_746 - Alkyl hydroperoxide reductase subunit C-like protein, at 848,558 to 849,160
_746
Pf1N1B4_747 - Bacterioferritin-associated ferredoxin, at 849,486 to 849,704
_747
Pf1N1B4_748 - hypothetical protein, at 849,939 to 850,139
_748
Position (kb) 849
850
851 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 849.052 kb on - strand, within Pf1N1B4_746 at 849.177 kb on + strand at 849.177 kb on + strand at 849.178 kb on - strand at 849.178 kb on - strand at 849.178 kb on - strand at 849.178 kb on - strand at 849.178 kb on - strand at 849.178 kb on - strand at 849.181 kb on - strand at 849.181 kb on - strand at 849.181 kb on - strand at 849.269 kb on + strand at 849.269 kb on + strand at 849.269 kb on + strand at 849.270 kb on - strand at 849.270 kb on - strand at 849.270 kb on - strand at 849.270 kb on - strand at 849.270 kb on - strand at 849.270 kb on - strand at 849.270 kb on - strand at 849.270 kb on - strand at 849.270 kb on - strand at 849.270 kb on - strand at 849.270 kb on - strand at 849.324 kb on - strand at 849.338 kb on + strand at 849.338 kb on + strand at 849.339 kb on - strand at 849.339 kb on - strand at 849.340 kb on + strand at 849.340 kb on + strand at 849.340 kb on + strand at 849.341 kb on - strand at 849.391 kb on + strand at 849.391 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.540 kb on + strand, within Pf1N1B4_747 at 849.540 kb on + strand, within Pf1N1B4_747 at 849.540 kb on + strand, within Pf1N1B4_747 at 849.540 kb on + strand, within Pf1N1B4_747 at 849.540 kb on + strand, within Pf1N1B4_747 at 849.540 kb on + strand, within Pf1N1B4_747 at 849.540 kb on + strand, within Pf1N1B4_747 at 849.540 kb on + strand, within Pf1N1B4_747 at 849.540 kb on + strand, within Pf1N1B4_747 at 849.540 kb on + strand, within Pf1N1B4_747 at 849.540 kb on + strand, within Pf1N1B4_747 at 849.540 kb on + strand, within Pf1N1B4_747 at 849.541 kb on - strand, within Pf1N1B4_747 at 849.541 kb on - strand, within Pf1N1B4_747 at 849.541 kb on - strand, within Pf1N1B4_747 at 849.541 kb on - strand, within Pf1N1B4_747 at 849.541 kb on - strand, within Pf1N1B4_747 at 849.541 kb on - strand, within Pf1N1B4_747 at 849.558 kb on + strand, within Pf1N1B4_747 at 849.706 kb on + strand at 849.706 kb on + strand at 849.706 kb on + strand at 849.707 kb on - strand at 849.711 kb on + strand at 849.711 kb on + strand at 849.712 kb on - strand at 849.712 kb on - strand at 849.712 kb on - strand at 849.712 kb on - strand at 849.712 kb on - strand at 849.712 kb on - strand at 849.743 kb on + strand at 849.743 kb on + strand at 849.744 kb on - strand at 849.747 kb on + strand at 849.747 kb on + strand at 849.899 kb on + strand at 849.899 kb on + strand at 849.900 kb on - strand at 849.900 kb on - strand at 849.900 kb on - strand at 849.900 kb on - strand at 849.901 kb on + strand at 849.902 kb on - strand at 849.902 kb on - strand at 849.902 kb on - strand at 849.902 kb on - strand at 849.965 kb on - strand, within Pf1N1B4_748 at 849.965 kb on - strand, within Pf1N1B4_748 at 849.997 kb on - strand, within Pf1N1B4_748 at 849.997 kb on - strand, within Pf1N1B4_748 at 850.044 kb on - strand, within Pf1N1B4_748 at 850.051 kb on + strand at 850.052 kb on - strand, within Pf1N1B4_748 at 850.069 kb on - strand, within Pf1N1B4_748 at 850.071 kb on - strand, within Pf1N1B4_748 at 850.109 kb on + strand, within Pf1N1B4_748 at 850.110 kb on - strand, within Pf1N1B4_748 at 850.110 kb on - strand at 850.110 kb on - strand, within Pf1N1B4_748 at 850.259 kb on + strand at 850.259 kb on + strand at 850.259 kb on + strand at 850.259 kb on + strand at 850.259 kb on + strand at 850.260 kb on - strand at 850.260 kb on - strand at 850.292 kb on + strand at 850.292 kb on + strand at 850.292 kb on + strand at 850.293 kb on - strand at 850.293 kb on - strand at 850.385 kb on + strand at 850.386 kb on - strand at 850.386 kb on - strand at 850.397 kb on - strand at 850.399 kb on + strand at 850.399 kb on + strand at 850.400 kb on - strand at 850.400 kb on - strand at 850.439 kb on + strand at 850.439 kb on + strand at 850.440 kb on - strand at 850.508 kb on + strand at 850.508 kb on + strand at 850.702 kb on - strand at 850.702 kb on - strand at 850.702 kb on - strand at 850.702 kb on - strand at 850.721 kb on + strand at 850.745 kb on + strand at 850.745 kb on + strand at 850.746 kb on - strand at 850.746 kb on - strand at 850.746 kb on - strand at 850.746 kb on - strand at 850.746 kb on - strand at 850.746 kb on - strand at 850.819 kb on - strand at 850.825 kb on + strand at 850.826 kb on - strand at 850.826 kb on - strand at 850.907 kb on + strand at 850.907 kb on + strand at 850.907 kb on + strand at 850.908 kb on - strand at 850.908 kb on - strand at 850.908 kb on - strand at 850.908 kb on - strand at 850.908 kb on - strand at 850.984 kb on + strand at 850.992 kb on - strand at 850.992 kb on - strand at 850.992 kb on - strand at 850.992 kb on - strand at 851.032 kb on - strand at 851.048 kb on + strand at 851.048 kb on + strand at 851.049 kb on - strand at 851.049 kb on - strand at 851.049 kb on - strand at 851.049 kb on - strand at 851.131 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 849,052 - Pf1N1B4_746 0.82 -0.2 849,177 + +0.6 849,177 + +0.4 849,178 - +1.1 849,178 - -0.4 849,178 - +0.3 849,178 - +0.2 849,178 - -2.4 849,178 - +1.8 849,181 - -3.3 849,181 - -0.9 849,181 - -1.0 849,269 + -1.7 849,269 + -1.0 849,269 + +1.3 849,270 - -1.7 849,270 - -2.5 849,270 - +2.4 849,270 - +0.4 849,270 - +0.6 849,270 - -1.2 849,270 - -1.6 849,270 - -1.6 849,270 - -1.5 849,270 - -1.4 849,270 - -2.5 849,324 - +0.7 849,338 + +0.1 849,338 + +1.0 849,339 - +0.2 849,339 - -1.4 849,340 + -0.1 849,340 + -0.6 849,340 + +1.2 849,341 - +1.1 849,391 + -0.7 849,391 + -0.4 849,485 + -1.9 849,485 + -2.1 849,485 + +0.8 849,485 + +0.5 849,485 + -0.6 849,485 + -0.4 849,485 + -1.8 849,485 + -2.4 849,485 + +1.1 849,485 + +2.0 849,485 + +1.0 849,485 + +0.4 849,485 + +0.1 849,485 + +2.6 849,485 + +0.1 849,485 + -2.5 849,485 + -0.6 849,485 + +0.1 849,485 + +1.6 849,485 + +1.7 849,485 + -1.4 849,485 + -1.3 849,485 + +0.5 849,485 + -1.1 849,485 + +0.8 849,485 + +0.0 849,485 + +1.3 849,485 + +0.0 849,485 + +0.7 849,485 + -1.0 849,485 + -0.2 849,485 + -0.1 849,485 + -1.5 849,485 + -1.4 849,485 + -1.8 849,485 + +0.9 849,485 + +3.0 849,485 + +1.1 849,485 + +0.5 849,486 - +1.2 849,486 - -0.2 849,486 - -0.1 849,486 - -0.1 849,486 - -0.3 849,486 - +1.7 849,486 - -1.1 849,486 - -0.3 849,486 - +1.1 849,486 - -2.3 849,486 - -2.8 849,486 - +0.9 849,486 - +1.0 849,486 - +1.4 849,486 - +0.7 849,486 - +0.8 849,486 - +0.1 849,486 - -1.1 849,486 - -0.6 849,486 - -0.9 849,486 - -1.6 849,486 - -0.4 849,486 - +0.7 849,486 - -1.5 849,486 - +0.4 849,486 - +0.4 849,486 - -0.9 849,486 - +1.6 849,486 - +1.0 849,486 - -1.7 849,486 - -1.5 849,486 - -0.3 849,486 - +1.1 849,486 - -0.2 849,486 - +0.5 849,486 - +0.6 849,486 - +1.9 849,486 - +0.2 849,489 + +0.1 849,489 + -0.1 849,489 + -1.4 849,489 + -0.4 849,489 + -2.2 849,489 + +0.5 849,489 + +1.5 849,489 + +1.2 849,489 + +0.1 849,489 + -0.6 849,489 + +0.9 849,489 + +0.1 849,489 + +0.8 849,489 + +0.1 849,489 + -0.2 849,489 + -1.0 849,489 + -2.3 849,489 + -0.8 849,489 + -0.2 849,489 + -2.6 849,489 + -0.7 849,489 + -1.6 849,489 + +0.1 849,489 + +0.7 849,489 + -0.4 849,489 + +0.3 849,489 + -1.0 849,489 + +0.6 849,489 + -0.0 849,490 - -1.0 849,490 - +1.1 849,490 - +0.2 849,490 - -1.7 849,490 - +0.2 849,490 - -0.1 849,490 - +0.4 849,490 - -0.4 849,490 - -0.0 849,490 - +0.8 849,490 - -1.1 849,490 - -2.4 849,490 - +0.5 849,490 - -1.1 849,490 - -0.8 849,490 - +0.1 849,490 - -0.9 849,490 - +0.0 849,490 - -0.1 849,540 + Pf1N1B4_747 0.25 -1.9 849,540 + Pf1N1B4_747 0.25 +0.3 849,540 + Pf1N1B4_747 0.25 +1.7 849,540 + Pf1N1B4_747 0.25 -0.5 849,540 + Pf1N1B4_747 0.25 -2.5 849,540 + Pf1N1B4_747 0.25 +0.5 849,540 + Pf1N1B4_747 0.25 +1.1 849,540 + Pf1N1B4_747 0.25 -0.6 849,540 + Pf1N1B4_747 0.25 -0.8 849,540 + Pf1N1B4_747 0.25 +0.1 849,540 + Pf1N1B4_747 0.25 -0.8 849,540 + Pf1N1B4_747 0.25 -0.6 849,541 - Pf1N1B4_747 0.25 +1.3 849,541 - Pf1N1B4_747 0.25 +1.2 849,541 - Pf1N1B4_747 0.25 -1.4 849,541 - Pf1N1B4_747 0.25 -0.1 849,541 - Pf1N1B4_747 0.25 -1.1 849,541 - Pf1N1B4_747 0.25 -1.7 849,558 + Pf1N1B4_747 0.33 -1.6 849,706 + -2.4 849,706 + -1.5 849,706 + -0.0 849,707 - -0.0 849,711 + -0.7 849,711 + +0.4 849,712 - -1.5 849,712 - +0.6 849,712 - -0.2 849,712 - +1.4 849,712 - +0.2 849,712 - +0.4 849,743 + -0.8 849,743 + -0.7 849,744 - +0.5 849,747 + +0.2 849,747 + +1.4 849,899 + -0.9 849,899 + +1.6 849,900 - -0.1 849,900 - +0.3 849,900 - -2.1 849,900 - -0.1 849,901 + -2.2 849,902 - -0.3 849,902 - -1.6 849,902 - +1.6 849,902 - -2.7 849,965 - Pf1N1B4_748 0.13 -0.7 849,965 - Pf1N1B4_748 0.13 -0.6 849,997 - Pf1N1B4_748 0.29 -3.8 849,997 - Pf1N1B4_748 0.29 -1.6 850,044 - Pf1N1B4_748 0.52 -1.9 850,051 + -1.1 850,052 - Pf1N1B4_748 0.56 -1.1 850,069 - Pf1N1B4_748 0.65 -1.1 850,071 - Pf1N1B4_748 0.66 +0.4 850,109 + Pf1N1B4_748 0.85 -1.5 850,110 - Pf1N1B4_748 0.85 -2.3 850,110 - +2.3 850,110 - Pf1N1B4_748 0.85 -1.1 850,259 + -1.6 850,259 + -0.7 850,259 + -1.0 850,259 + -1.2 850,259 + -2.1 850,260 - -2.8 850,260 - -0.4 850,292 + +1.1 850,292 + -2.6 850,292 + +1.3 850,293 - +0.6 850,293 - -1.7 850,385 + +1.6 850,386 - +1.3 850,386 - +2.1 850,397 - +1.6 850,399 + -0.9 850,399 + +1.5 850,400 - -1.6 850,400 - +1.5 850,439 + -0.6 850,439 + +2.3 850,440 - +0.1 850,508 + +2.4 850,508 + -1.0 850,702 - +1.1 850,702 - +0.2 850,702 - -0.0 850,702 - -1.7 850,721 + +1.0 850,745 + +0.8 850,745 + +0.6 850,746 - +2.0 850,746 - +1.2 850,746 - -1.3 850,746 - -2.2 850,746 - -0.1 850,746 - -0.7 850,819 - -2.6 850,825 + -0.4 850,826 - -0.9 850,826 - +0.0 850,907 + +1.9 850,907 + +0.1 850,907 + -1.9 850,908 - -1.7 850,908 - -0.7 850,908 - -1.8 850,908 - -0.7 850,908 - -2.2 850,984 + +1.1 850,992 - -0.7 850,992 - -0.6 850,992 - +0.8 850,992 - -1.0 851,032 - -1.3 851,048 + -0.9 851,048 + -0.1 851,049 - -1.1 851,049 - +2.4 851,049 - +1.4 851,049 - -1.3 851,131 - +1.0
Or see this region's nucleotide sequence