Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5527 and Pf1N1B4_5528 are separated by 300 nucleotides
Pf1N1B4_5527 - hypothetical protein, at 286,751 to 287,182
_5527
Pf1N1B4_5528 - hypothetical protein, at 287,483 to 287,701
_5528
Position (kb) 286
287
288 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 285.752 kb on + strand at 285.752 kb on + strand at 285.752 kb on + strand at 285.752 kb on + strand at 285.752 kb on + strand at 285.752 kb on + strand at 285.752 kb on + strand at 285.785 kb on + strand at 285.785 kb on + strand at 285.785 kb on + strand at 285.785 kb on + strand at 285.786 kb on - strand at 285.789 kb on + strand at 285.789 kb on + strand at 285.789 kb on + strand at 285.789 kb on + strand at 285.789 kb on + strand at 285.790 kb on - strand at 285.790 kb on - strand at 285.790 kb on - strand at 285.879 kb on + strand at 285.879 kb on + strand at 285.879 kb on + strand at 285.880 kb on - strand at 285.927 kb on + strand at 285.962 kb on + strand at 285.963 kb on - strand at 285.963 kb on - strand at 285.963 kb on - strand at 286.035 kb on - strand at 286.137 kb on + strand at 286.137 kb on + strand at 286.137 kb on + strand at 286.138 kb on - strand at 286.160 kb on - strand at 286.160 kb on - strand at 286.160 kb on - strand at 286.173 kb on + strand at 286.173 kb on + strand at 286.174 kb on - strand at 286.217 kb on + strand at 286.255 kb on + strand at 286.255 kb on + strand at 286.255 kb on + strand at 286.256 kb on - strand at 286.318 kb on + strand at 286.318 kb on + strand at 286.318 kb on + strand at 286.326 kb on + strand at 286.326 kb on + strand at 286.326 kb on + strand at 286.326 kb on + strand at 286.327 kb on - strand at 286.327 kb on - strand at 286.330 kb on + strand at 286.363 kb on + strand at 286.364 kb on - strand at 286.389 kb on + strand at 286.389 kb on + strand at 286.389 kb on + strand at 286.389 kb on + strand at 286.389 kb on + strand at 286.390 kb on - strand at 286.390 kb on - strand at 286.390 kb on - strand at 286.390 kb on - strand at 286.390 kb on - strand at 286.390 kb on - strand at 286.390 kb on - strand at 286.390 kb on - strand at 286.421 kb on + strand at 286.421 kb on + strand at 286.435 kb on + strand at 286.435 kb on + strand at 286.435 kb on + strand at 286.435 kb on + strand at 286.435 kb on + strand at 286.435 kb on + strand at 286.436 kb on - strand at 286.436 kb on - strand at 286.436 kb on - strand at 286.439 kb on - strand at 286.439 kb on - strand at 286.439 kb on - strand at 286.464 kb on + strand at 286.546 kb on + strand at 286.547 kb on - strand at 286.598 kb on + strand at 286.640 kb on + strand at 286.640 kb on + strand at 286.640 kb on + strand at 286.640 kb on + strand at 286.640 kb on + strand at 286.640 kb on + strand at 286.640 kb on + strand at 286.640 kb on + strand at 286.640 kb on + strand at 286.641 kb on - strand at 286.641 kb on - strand at 286.641 kb on - strand at 286.641 kb on - strand at 286.641 kb on - strand at 286.643 kb on + strand at 286.643 kb on + strand at 286.643 kb on + strand at 286.644 kb on - strand at 286.644 kb on - strand at 286.644 kb on - strand at 286.649 kb on + strand at 286.649 kb on + strand at 286.649 kb on + strand at 286.650 kb on - strand at 286.650 kb on - strand at 286.650 kb on - strand at 286.650 kb on - strand at 286.662 kb on + strand at 286.662 kb on + strand at 286.662 kb on + strand at 286.662 kb on + strand at 286.663 kb on - strand at 286.663 kb on - strand at 286.667 kb on + strand at 286.667 kb on + strand at 286.667 kb on + strand at 286.668 kb on - strand at 286.668 kb on - strand at 286.750 kb on - strand at 286.753 kb on - strand at 286.753 kb on - strand at 286.774 kb on - strand at 286.774 kb on - strand at 286.774 kb on - strand at 286.801 kb on - strand, within Pf1N1B4_5527 at 286.841 kb on - strand, within Pf1N1B4_5527 at 286.841 kb on - strand, within Pf1N1B4_5527 at 286.941 kb on + strand, within Pf1N1B4_5527 at 286.941 kb on + strand at 286.941 kb on + strand at 286.942 kb on - strand, within Pf1N1B4_5527 at 286.942 kb on - strand, within Pf1N1B4_5527 at 286.942 kb on - strand, within Pf1N1B4_5527 at 286.942 kb on - strand, within Pf1N1B4_5527 at 286.942 kb on - strand, within Pf1N1B4_5527 at 286.942 kb on - strand at 287.038 kb on - strand, within Pf1N1B4_5527 at 287.091 kb on + strand, within Pf1N1B4_5527 at 287.092 kb on - strand, within Pf1N1B4_5527 at 287.192 kb on - strand at 287.284 kb on - strand at 287.317 kb on + strand at 287.402 kb on + strand at 287.403 kb on - strand at 287.423 kb on + strand at 287.423 kb on + strand at 287.424 kb on - strand at 287.462 kb on + strand at 287.463 kb on - strand at 287.463 kb on - strand at 287.702 kb on - strand at 287.702 kb on - strand at 287.702 kb on - strand at 287.702 kb on - strand at 287.702 kb on - strand at 287.702 kb on - strand at 287.771 kb on + strand at 287.772 kb on - strand at 287.808 kb on + strand at 287.808 kb on + strand at 287.808 kb on + strand at 287.808 kb on + strand at 287.809 kb on - strand at 287.809 kb on - strand at 287.809 kb on - strand at 287.905 kb on + strand at 287.906 kb on - strand at 287.906 kb on - strand at 287.947 kb on + strand at 287.947 kb on + strand at 287.947 kb on + strand at 287.948 kb on - strand at 287.984 kb on + strand at 288.030 kb on + strand at 288.030 kb on + strand at 288.030 kb on + strand at 288.030 kb on + strand at 288.030 kb on + strand at 288.030 kb on + strand at 288.030 kb on + strand at 288.030 kb on + strand at 288.030 kb on + strand at 288.030 kb on + strand at 288.031 kb on - strand at 288.031 kb on - strand at 288.031 kb on - strand at 288.031 kb on - strand at 288.031 kb on - strand at 288.034 kb on + strand at 288.059 kb on + strand at 288.060 kb on - strand at 288.060 kb on - strand at 288.060 kb on - strand at 288.060 kb on - strand at 288.060 kb on - strand at 288.105 kb on + strand at 288.140 kb on + strand at 288.140 kb on + strand at 288.140 kb on + strand at 288.140 kb on + strand at 288.140 kb on + strand at 288.141 kb on - strand at 288.141 kb on - strand at 288.141 kb on - strand at 288.141 kb on - strand at 288.141 kb on - strand at 288.143 kb on + strand at 288.143 kb on + strand at 288.144 kb on - strand at 288.144 kb on - strand at 288.144 kb on - strand at 288.144 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 285,752 + +0.1 285,752 + +0.4 285,752 + -1.0 285,752 + -0.8 285,752 + +0.2 285,752 + +1.3 285,752 + -0.8 285,785 + +0.7 285,785 + -2.0 285,785 + -0.6 285,785 + -0.4 285,786 - +1.8 285,789 + -0.5 285,789 + -0.4 285,789 + +0.5 285,789 + +2.1 285,789 + +0.1 285,790 - +0.2 285,790 - -0.4 285,790 - +1.1 285,879 + -0.3 285,879 + -0.3 285,879 + +0.1 285,880 - +1.4 285,927 + +1.4 285,962 + +1.9 285,963 - +0.6 285,963 - +1.7 285,963 - -0.6 286,035 - -0.3 286,137 + -1.5 286,137 + -0.7 286,137 + +0.5 286,138 - +0.1 286,160 - -0.8 286,160 - -0.2 286,160 - +0.0 286,173 + +0.3 286,173 + +1.0 286,174 - -0.9 286,217 + +1.5 286,255 + -0.3 286,255 + +2.4 286,255 + -1.3 286,256 - +0.0 286,318 + -2.2 286,318 + +1.2 286,318 + -2.0 286,326 + +1.6 286,326 + +0.0 286,326 + +0.3 286,326 + -2.0 286,327 - -1.3 286,327 - +1.6 286,330 + -1.4 286,363 + +0.6 286,364 - +0.3 286,389 + +1.4 286,389 + +0.5 286,389 + -0.2 286,389 + -1.8 286,389 + +0.8 286,390 - +0.4 286,390 - -1.9 286,390 - +0.5 286,390 - +0.4 286,390 - -0.6 286,390 - -1.5 286,390 - +0.0 286,390 - +2.1 286,421 + -1.4 286,421 + -1.2 286,435 + -1.9 286,435 + +0.3 286,435 + +2.2 286,435 + -2.2 286,435 + -1.0 286,435 + +3.6 286,436 - -0.6 286,436 - -0.8 286,436 - +0.5 286,439 - +0.7 286,439 - -0.7 286,439 - -2.0 286,464 + +0.2 286,546 + +1.7 286,547 - -1.3 286,598 + +0.2 286,640 + +0.4 286,640 + -1.6 286,640 + +0.4 286,640 + +0.7 286,640 + +1.6 286,640 + +1.0 286,640 + +0.7 286,640 + -0.0 286,640 + -0.2 286,641 - +0.5 286,641 - -0.7 286,641 - -0.9 286,641 - +1.6 286,641 - -0.2 286,643 + -1.5 286,643 + -0.6 286,643 + -1.9 286,644 - -1.3 286,644 - -0.7 286,644 - -0.6 286,649 + -0.7 286,649 + +1.4 286,649 + -0.8 286,650 - -1.4 286,650 - +0.3 286,650 - +0.5 286,650 - -1.3 286,662 + +0.2 286,662 + -1.2 286,662 + +0.2 286,662 + -1.0 286,663 - +1.4 286,663 - -2.5 286,667 + +0.2 286,667 + -1.5 286,667 + -0.4 286,668 - -1.9 286,668 - -0.2 286,750 - +0.4 286,753 - +2.3 286,753 - +1.3 286,774 - +0.3 286,774 - -0.9 286,774 - -0.7 286,801 - Pf1N1B4_5527 0.12 -0.4 286,841 - Pf1N1B4_5527 0.21 -0.8 286,841 - Pf1N1B4_5527 0.21 +1.2 286,941 + Pf1N1B4_5527 0.44 -0.3 286,941 + +1.4 286,941 + +0.8 286,942 - Pf1N1B4_5527 0.44 -1.0 286,942 - Pf1N1B4_5527 0.44 -2.5 286,942 - Pf1N1B4_5527 0.44 -1.0 286,942 - Pf1N1B4_5527 0.44 -2.7 286,942 - Pf1N1B4_5527 0.44 +0.7 286,942 - +0.8 287,038 - Pf1N1B4_5527 0.66 -1.9 287,091 + Pf1N1B4_5527 0.79 -1.0 287,092 - Pf1N1B4_5527 0.79 -0.8 287,192 - -1.0 287,284 - -2.1 287,317 + -0.0 287,402 + -2.3 287,403 - -2.0 287,423 + -2.4 287,423 + -0.9 287,424 - +0.8 287,462 + -0.1 287,463 - -0.9 287,463 - +1.4 287,702 - +0.2 287,702 - -1.2 287,702 - -2.1 287,702 - -0.4 287,702 - -0.4 287,702 - +0.7 287,771 + -1.2 287,772 - +0.6 287,808 + -1.6 287,808 + -1.0 287,808 + -0.9 287,808 + -0.6 287,809 - -2.9 287,809 - -0.2 287,809 - +1.9 287,905 + +0.3 287,906 - -0.2 287,906 - +2.3 287,947 + +0.4 287,947 + -0.8 287,947 + +0.6 287,948 - +2.1 287,984 + -1.6 288,030 + -1.6 288,030 + +1.4 288,030 + -0.7 288,030 + -1.6 288,030 + +1.0 288,030 + +0.1 288,030 + -0.2 288,030 + +0.5 288,030 + -0.8 288,030 + -1.0 288,031 - -1.2 288,031 - +2.2 288,031 - +0.1 288,031 - -0.6 288,031 - +0.6 288,034 + +0.6 288,059 + -1.6 288,060 - +1.4 288,060 - -0.2 288,060 - -0.8 288,060 - +3.0 288,060 - -0.8 288,105 + +0.8 288,140 + -0.4 288,140 + -1.2 288,140 + -0.2 288,140 + -0.7 288,140 + -0.2 288,141 - -1.2 288,141 - -1.1 288,141 - -0.2 288,141 - +0.3 288,141 - -0.6 288,143 + -0.9 288,143 + -0.2 288,144 - +0.5 288,144 - +0.6 288,144 - +0.1 288,144 - -2.0
Or see this region's nucleotide sequence