Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4898

Experiment: LB 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4897 and Pf1N1B4_4898 are separated by 99 nucleotidesPf1N1B4_4898 and Pf1N1B4_4899 are separated by 654 nucleotides Pf1N1B4_4897 - Transcriptional regulator, LysR family, at 5,419,463 to 5,420,347 _4897 Pf1N1B4_4898 - Alcohol dehydrogenase (EC 1.1.1.1), at 5,420,447 to 5,420,560 _4898 Pf1N1B4_4899 - Secreted alkaline metalloproteinase (EC 3.4.24.-), PrtA/B/C/G homolog, at 5,421,215 to 5,422,672 _4899 Position (kb) 5420 5421Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5419.600 kb on - strand, within Pf1N1B4_4897at 5419.600 kb on - strandat 5419.762 kb on - strandat 5420.145 kb on - strandat 5420.145 kb on - strand, within Pf1N1B4_4897at 5420.240 kb on + strandat 5420.241 kb on - strand, within Pf1N1B4_4897at 5420.241 kb on - strand, within Pf1N1B4_4897at 5420.321 kb on + strandat 5420.321 kb on + strandat 5420.322 kb on - strandat 5420.495 kb on + strandat 5420.496 kb on - strand, within Pf1N1B4_4898at 5420.496 kb on - strand, within Pf1N1B4_4898at 5420.496 kb on - strand, within Pf1N1B4_4898at 5420.496 kb on - strand, within Pf1N1B4_4898at 5420.562 kb on - strandat 5420.562 kb on - strandat 5420.562 kb on - strandat 5420.610 kb on - strandat 5420.610 kb on - strandat 5420.610 kb on - strandat 5420.610 kb on - strandat 5420.610 kb on - strandat 5420.614 kb on - strandat 5420.615 kb on + strandat 5420.665 kb on - strandat 5420.694 kb on - strandat 5420.911 kb on - strandat 5421.019 kb on + strandat 5421.021 kb on + strandat 5421.299 kb on + strandat 5421.329 kb on + strandat 5421.419 kb on + strand, within Pf1N1B4_4899at 5421.459 kb on - strand, within Pf1N1B4_4899at 5421.459 kb on - strand, within Pf1N1B4_4899

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 37C
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5,419,600 - Pf1N1B4_4897 0.15 +1.2
5,419,600 - +1.5
5,419,762 - +0.2
5,420,145 - +0.9
5,420,145 - Pf1N1B4_4897 0.77 +0.2
5,420,240 + -1.1
5,420,241 - Pf1N1B4_4897 0.88 +1.9
5,420,241 - Pf1N1B4_4897 0.88 -1.3
5,420,321 + -1.0
5,420,321 + -0.8
5,420,322 - -0.4
5,420,495 + -0.3
5,420,496 - Pf1N1B4_4898 0.43 -0.5
5,420,496 - Pf1N1B4_4898 0.43 +1.9
5,420,496 - Pf1N1B4_4898 0.43 -0.8
5,420,496 - Pf1N1B4_4898 0.43 +1.3
5,420,562 - -3.5
5,420,562 - +0.8
5,420,562 - +2.6
5,420,610 - -0.8
5,420,610 - +0.9
5,420,610 - +1.2
5,420,610 - +2.1
5,420,610 - -1.0
5,420,614 - -0.1
5,420,615 + -1.1
5,420,665 - +0.2
5,420,694 - +2.1
5,420,911 - +0.3
5,421,019 + -0.3
5,421,021 + +0.6
5,421,299 + +0.2
5,421,329 + -1.6
5,421,419 + Pf1N1B4_4899 0.14 +0.3
5,421,459 - Pf1N1B4_4899 0.17 -1.5
5,421,459 - Pf1N1B4_4899 0.17 +0.5

Or see this region's nucleotide sequence