Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4722

Experiment: LB 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4720 and Pf1N1B4_4721 are separated by 18 nucleotidesPf1N1B4_4721 and Pf1N1B4_4722 are separated by 116 nucleotidesPf1N1B4_4722 and Pf1N1B4_4723 are separated by 194 nucleotides Pf1N1B4_4720 - AFG1-like ATPase, at 5,216,261 to 5,217,379 _4720 Pf1N1B4_4721 - Nuclease inhibitor, at 5,217,398 to 5,217,979 _4721 Pf1N1B4_4722 - Histone acetyltransferase HPA2 and related acetyltransferases, at 5,218,096 to 5,218,587 _4722 Pf1N1B4_4723 - UPF0141 membrane protein YijP possibly required for phosphoethanolamine modification of lipopolysaccharide, at 5,218,782 to 5,220,527 _4723 Position (kb) 5218 5219Strain fitness (log2 ratio) -2 -1 0 1 2at 5217.261 kb on - strand, within Pf1N1B4_4720at 5217.294 kb on - strandat 5217.306 kb on - strandat 5217.576 kb on - strandat 5217.576 kb on - strand, within Pf1N1B4_4721at 5217.576 kb on - strand, within Pf1N1B4_4721at 5217.703 kb on + strand, within Pf1N1B4_4721at 5218.132 kb on + strandat 5218.169 kb on + strandat 5218.224 kb on + strand, within Pf1N1B4_4722at 5218.489 kb on - strand, within Pf1N1B4_4722at 5218.698 kb on + strandat 5218.751 kb on + strandat 5218.751 kb on + strandat 5218.783 kb on + strandat 5218.809 kb on - strandat 5218.868 kb on - strandat 5219.164 kb on + strand, within Pf1N1B4_4723at 5219.165 kb on - strandat 5219.233 kb on + strand, within Pf1N1B4_4723at 5219.348 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 37C
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5,217,261 - Pf1N1B4_4720 0.89 -0.5
5,217,294 - -0.6
5,217,306 - +0.5
5,217,576 - +2.5
5,217,576 - Pf1N1B4_4721 0.31 -1.3
5,217,576 - Pf1N1B4_4721 0.31 +0.7
5,217,703 + Pf1N1B4_4721 0.52 -0.8
5,218,132 + -0.6
5,218,169 + -0.3
5,218,224 + Pf1N1B4_4722 0.26 +0.7
5,218,489 - Pf1N1B4_4722 0.80 -1.4
5,218,698 + +0.3
5,218,751 + +0.3
5,218,751 + +0.6
5,218,783 + -2.2
5,218,809 - -1.7
5,218,868 - +0.8
5,219,164 + Pf1N1B4_4723 0.22 -1.9
5,219,165 - -0.3
5,219,233 + Pf1N1B4_4723 0.26 -2.3
5,219,348 - +2.0

Or see this region's nucleotide sequence