Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2557 and Pf1N1B4_2558 are separated by 33 nucleotides Pf1N1B4_2558 and Pf1N1B4_2559 are separated by 135 nucleotides
Pf1N1B4_2557 - 2-nitropropane dioxygenase (EC 1.13.11.32), at 2,899,322 to 2,900,290
_2557
Pf1N1B4_2558 - Protoporphyrinogen IX oxidase, novel form, HemJ (EC 1.3.-.-), at 2,900,324 to 2,900,755
_2558
Pf1N1B4_2559 - N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38), at 2,900,891 to 2,901,925
_2559
Position (kb)
2900
2901 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2899.587 kb on - strand, within Pf1N1B4_2557 at 2899.607 kb on - strand, within Pf1N1B4_2557 at 2899.648 kb on + strand, within Pf1N1B4_2557 at 2899.649 kb on - strand, within Pf1N1B4_2557 at 2899.649 kb on - strand, within Pf1N1B4_2557 at 2899.650 kb on + strand, within Pf1N1B4_2557 at 2899.650 kb on + strand, within Pf1N1B4_2557 at 2899.650 kb on + strand, within Pf1N1B4_2557 at 2899.650 kb on + strand, within Pf1N1B4_2557 at 2899.651 kb on - strand, within Pf1N1B4_2557 at 2899.651 kb on - strand, within Pf1N1B4_2557 at 2899.941 kb on + strand, within Pf1N1B4_2557 at 2899.941 kb on + strand, within Pf1N1B4_2557 at 2899.941 kb on + strand, within Pf1N1B4_2557 at 2900.000 kb on + strand, within Pf1N1B4_2557 at 2900.076 kb on + strand, within Pf1N1B4_2557 at 2900.076 kb on + strand at 2900.180 kb on + strand, within Pf1N1B4_2557 at 2900.224 kb on + strand at 2900.225 kb on - strand at 2900.243 kb on + strand at 2900.244 kb on - strand at 2900.244 kb on - strand at 2900.325 kb on + strand at 2900.325 kb on + strand at 2900.326 kb on - strand at 2900.760 kb on - strand at 2900.760 kb on - strand at 2900.760 kb on - strand at 2900.789 kb on + strand at 2900.789 kb on + strand at 2900.789 kb on + strand at 2900.789 kb on + strand at 2900.789 kb on + strand at 2900.789 kb on + strand at 2900.789 kb on + strand at 2900.789 kb on + strand at 2900.789 kb on + strand at 2900.789 kb on + strand at 2900.789 kb on + strand at 2900.789 kb on + strand at 2900.789 kb on + strand at 2900.789 kb on + strand at 2900.789 kb on + strand at 2900.789 kb on + strand at 2900.790 kb on - strand at 2900.790 kb on - strand at 2900.790 kb on - strand at 2900.790 kb on - strand at 2900.790 kb on - strand at 2900.792 kb on + strand at 2900.792 kb on + strand at 2900.849 kb on + strand at 2900.849 kb on + strand at 2900.890 kb on + strand at 2900.890 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 2,899,587 - Pf1N1B4_2557 0.27 -0.1 2,899,607 - Pf1N1B4_2557 0.29 +0.4 2,899,648 + Pf1N1B4_2557 0.34 -0.3 2,899,649 - Pf1N1B4_2557 0.34 +0.4 2,899,649 - Pf1N1B4_2557 0.34 -1.2 2,899,650 + Pf1N1B4_2557 0.34 -0.2 2,899,650 + Pf1N1B4_2557 0.34 +0.8 2,899,650 + Pf1N1B4_2557 0.34 -0.1 2,899,650 + Pf1N1B4_2557 0.34 -0.1 2,899,651 - Pf1N1B4_2557 0.34 -1.2 2,899,651 - Pf1N1B4_2557 0.34 -1.4 2,899,941 + Pf1N1B4_2557 0.64 -1.1 2,899,941 + Pf1N1B4_2557 0.64 +0.0 2,899,941 + Pf1N1B4_2557 0.64 -2.2 2,900,000 + Pf1N1B4_2557 0.70 -0.6 2,900,076 + Pf1N1B4_2557 0.78 -1.0 2,900,076 + +0.3 2,900,180 + Pf1N1B4_2557 0.89 +0.5 2,900,224 + -0.2 2,900,225 - -0.2 2,900,243 + -2.1 2,900,244 - -1.2 2,900,244 - +0.3 2,900,325 + -0.9 2,900,325 + +0.2 2,900,326 - +1.0 2,900,760 - +1.0 2,900,760 - -0.7 2,900,760 - +0.6 2,900,789 + -0.6 2,900,789 + +0.5 2,900,789 + +0.0 2,900,789 + +1.6 2,900,789 + +0.4 2,900,789 + +0.3 2,900,789 + +2.3 2,900,789 + -1.2 2,900,789 + +1.1 2,900,789 + +1.9 2,900,789 + +0.0 2,900,789 + -1.0 2,900,789 + +0.5 2,900,789 + +1.2 2,900,789 + +2.0 2,900,789 + +1.1 2,900,790 - +1.3 2,900,790 - +0.6 2,900,790 - +2.0 2,900,790 - -2.0 2,900,790 - +1.9 2,900,792 + -1.6 2,900,792 + +1.3 2,900,849 + +1.2 2,900,849 + -0.2 2,900,890 + -0.4 2,900,890 + +2.3
Or see this region's nucleotide sequence