Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2310

Experiment: LB 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2308 and Pf1N1B4_2309 are separated by 30 nucleotidesPf1N1B4_2309 and Pf1N1B4_2310 are separated by 54 nucleotidesPf1N1B4_2310 and Pf1N1B4_2311 are separated by 114 nucleotidesPf1N1B4_2311 and Pf1N1B4_2312 are separated by 148 nucleotides Pf1N1B4_2308 - Predicted signal transduction protein, at 2,629,479 to 2,630,345 _2308 Pf1N1B4_2309 - Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23), at 2,630,376 to 2,631,188 _2309 Pf1N1B4_2310 - Cation/multidrug efflux pump, at 2,631,243 to 2,631,566 _2310 Pf1N1B4_2311 - 4Fe-4S ferredoxin, iron-sulfur binding, at 2,631,681 to 2,631,932 _2311 Pf1N1B4_2312 - Phosphopantetheine adenylyltransferase (EC 2.7.7.3), at 2,632,081 to 2,632,560 _2312 Position (kb) 2631 2632Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2630.277 kb on + strandat 2630.277 kb on + strandat 2630.277 kb on + strandat 2630.278 kb on - strandat 2630.550 kb on + strand, within Pf1N1B4_2309at 2630.550 kb on + strand, within Pf1N1B4_2309at 2630.550 kb on + strand, within Pf1N1B4_2309at 2630.551 kb on - strand, within Pf1N1B4_2309at 2630.551 kb on - strand, within Pf1N1B4_2309at 2630.551 kb on - strand, within Pf1N1B4_2309at 2630.551 kb on - strand, within Pf1N1B4_2309at 2630.551 kb on - strand, within Pf1N1B4_2309at 2630.551 kb on - strand, within Pf1N1B4_2309at 2630.692 kb on - strand, within Pf1N1B4_2309at 2630.788 kb on + strand, within Pf1N1B4_2309at 2630.788 kb on + strand, within Pf1N1B4_2309at 2630.788 kb on + strand, within Pf1N1B4_2309at 2630.788 kb on + strand, within Pf1N1B4_2309at 2630.788 kb on + strand, within Pf1N1B4_2309at 2630.788 kb on + strand, within Pf1N1B4_2309at 2630.789 kb on - strand, within Pf1N1B4_2309at 2630.789 kb on - strandat 2630.789 kb on - strand, within Pf1N1B4_2309at 2630.839 kb on + strand, within Pf1N1B4_2309at 2630.885 kb on + strand, within Pf1N1B4_2309at 2630.885 kb on + strand, within Pf1N1B4_2309at 2630.885 kb on + strand, within Pf1N1B4_2309at 2630.885 kb on + strand, within Pf1N1B4_2309at 2630.885 kb on + strand, within Pf1N1B4_2309at 2630.890 kb on - strand, within Pf1N1B4_2309at 2630.961 kb on + strand, within Pf1N1B4_2309at 2630.962 kb on - strand, within Pf1N1B4_2309at 2631.063 kb on + strand, within Pf1N1B4_2309at 2631.079 kb on + strand, within Pf1N1B4_2309at 2631.079 kb on + strand, within Pf1N1B4_2309at 2631.079 kb on + strand, within Pf1N1B4_2309at 2631.079 kb on + strand, within Pf1N1B4_2309at 2631.079 kb on + strand, within Pf1N1B4_2309at 2631.079 kb on + strand, within Pf1N1B4_2309at 2631.079 kb on + strand, within Pf1N1B4_2309at 2631.079 kb on + strand, within Pf1N1B4_2309at 2631.079 kb on + strand, within Pf1N1B4_2309at 2631.080 kb on - strand, within Pf1N1B4_2309at 2631.080 kb on - strand, within Pf1N1B4_2309at 2631.080 kb on - strand, within Pf1N1B4_2309at 2631.080 kb on - strand, within Pf1N1B4_2309at 2631.080 kb on - strand, within Pf1N1B4_2309at 2631.080 kb on - strand, within Pf1N1B4_2309at 2631.080 kb on - strand, within Pf1N1B4_2309at 2631.087 kb on + strandat 2631.087 kb on + strand, within Pf1N1B4_2309at 2631.196 kb on + strandat 2631.203 kb on + strandat 2631.203 kb on + strandat 2631.203 kb on + strandat 2631.203 kb on + strandat 2631.203 kb on + strandat 2631.203 kb on + strandat 2631.203 kb on + strandat 2631.204 kb on - strandat 2631.204 kb on - strandat 2631.204 kb on - strandat 2631.204 kb on - strandat 2631.204 kb on - strandat 2631.204 kb on - strandat 2631.205 kb on + strandat 2631.205 kb on + strandat 2631.571 kb on + strandat 2631.571 kb on + strandat 2631.571 kb on + strandat 2631.571 kb on + strandat 2631.571 kb on + strandat 2631.571 kb on + strandat 2631.599 kb on + strandat 2631.600 kb on - strandat 2631.600 kb on - strandat 2631.689 kb on + strandat 2631.707 kb on - strand, within Pf1N1B4_2311at 2631.707 kb on - strand, within Pf1N1B4_2311at 2631.936 kb on - strandat 2631.969 kb on - strandat 2632.056 kb on - strandat 2632.082 kb on + strandat 2632.082 kb on + strandat 2632.089 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 37C
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2,630,277 + -1.9
2,630,277 + +0.0
2,630,277 + +0.2
2,630,278 - -0.5
2,630,550 + Pf1N1B4_2309 0.21 -1.6
2,630,550 + Pf1N1B4_2309 0.21 -1.8
2,630,550 + Pf1N1B4_2309 0.21 -0.2
2,630,551 - Pf1N1B4_2309 0.22 +0.2
2,630,551 - Pf1N1B4_2309 0.22 -1.5
2,630,551 - Pf1N1B4_2309 0.22 -1.8
2,630,551 - Pf1N1B4_2309 0.22 +0.6
2,630,551 - Pf1N1B4_2309 0.22 -1.4
2,630,551 - Pf1N1B4_2309 0.22 -0.2
2,630,692 - Pf1N1B4_2309 0.39 +1.2
2,630,788 + Pf1N1B4_2309 0.51 -0.6
2,630,788 + Pf1N1B4_2309 0.51 -1.5
2,630,788 + Pf1N1B4_2309 0.51 -0.6
2,630,788 + Pf1N1B4_2309 0.51 -1.4
2,630,788 + Pf1N1B4_2309 0.51 -0.5
2,630,788 + Pf1N1B4_2309 0.51 -0.7
2,630,789 - Pf1N1B4_2309 0.51 -2.2
2,630,789 - +0.9
2,630,789 - Pf1N1B4_2309 0.51 -0.4
2,630,839 + Pf1N1B4_2309 0.57 -0.0
2,630,885 + Pf1N1B4_2309 0.63 -1.7
2,630,885 + Pf1N1B4_2309 0.63 -0.4
2,630,885 + Pf1N1B4_2309 0.63 +1.3
2,630,885 + Pf1N1B4_2309 0.63 +0.3
2,630,885 + Pf1N1B4_2309 0.63 -3.2
2,630,890 - Pf1N1B4_2309 0.63 -1.0
2,630,961 + Pf1N1B4_2309 0.72 -3.0
2,630,962 - Pf1N1B4_2309 0.72 +1.0
2,631,063 + Pf1N1B4_2309 0.85 +1.2
2,631,079 + Pf1N1B4_2309 0.86 -2.3
2,631,079 + Pf1N1B4_2309 0.86 +1.9
2,631,079 + Pf1N1B4_2309 0.86 +1.5
2,631,079 + Pf1N1B4_2309 0.86 -0.5
2,631,079 + Pf1N1B4_2309 0.86 +0.9
2,631,079 + Pf1N1B4_2309 0.86 -0.2
2,631,079 + Pf1N1B4_2309 0.86 -0.5
2,631,079 + Pf1N1B4_2309 0.86 +0.1
2,631,079 + Pf1N1B4_2309 0.86 +0.7
2,631,080 - Pf1N1B4_2309 0.87 +0.4
2,631,080 - Pf1N1B4_2309 0.87 -1.9
2,631,080 - Pf1N1B4_2309 0.87 -0.2
2,631,080 - Pf1N1B4_2309 0.87 -1.1
2,631,080 - Pf1N1B4_2309 0.87 +0.4
2,631,080 - Pf1N1B4_2309 0.87 +0.1
2,631,080 - Pf1N1B4_2309 0.87 +0.4
2,631,087 + -0.9
2,631,087 + Pf1N1B4_2309 0.87 -0.3
2,631,196 + -0.2
2,631,203 + +0.5
2,631,203 + +0.5
2,631,203 + -1.6
2,631,203 + +1.2
2,631,203 + -2.8
2,631,203 + +0.5
2,631,203 + +1.1
2,631,204 - -1.9
2,631,204 - +2.8
2,631,204 - +1.8
2,631,204 - -0.7
2,631,204 - +0.4
2,631,204 - -2.2
2,631,205 + +1.2
2,631,205 + +0.0
2,631,571 + +1.0
2,631,571 + -0.9
2,631,571 + -0.2
2,631,571 + +1.0
2,631,571 + -1.4
2,631,571 + -1.0
2,631,599 + +1.8
2,631,600 - -0.1
2,631,600 - +0.3
2,631,689 + -0.0
2,631,707 - Pf1N1B4_2311 0.10 -1.1
2,631,707 - Pf1N1B4_2311 0.10 +0.7
2,631,936 - +0.6
2,631,969 - -0.1
2,632,056 - +1.1
2,632,082 + +0.2
2,632,082 + -1.2
2,632,089 + -0.8

Or see this region's nucleotide sequence