Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04355

Experiment: Formate with Neomycin 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04350 and MMP_RS04355 are separated by 14 nucleotidesMMP_RS04355 and MMP_RS04360 are separated by 130 nucleotidesMMP_RS04360 and MMP_RS04365 are separated by 28 nucleotides MMP_RS04350: MMP_RS04350 - 2-hydroxyacyl-CoA dehydratase family protein, at 831,247 to 832,368 _RS04350 MMP_RS04355: MMP_RS04355 - ribonuclease H family protein, at 832,383 to 832,988 _RS04355 MMP_RS04360: MMP_RS04360 - hypothetical protein, at 833,119 to 833,310 _RS04360 MMP_RS04365: MMP_RS04365 - M48 family metallopeptidase, at 833,339 to 834,007 _RS04365 Position (kb) 832 833Strain fitness (log2 ratio) -2 -1 0 1at 831.463 kb on + strand, within MMP_RS04350at 831.463 kb on + strand, within MMP_RS04350at 831.477 kb on - strand, within MMP_RS04350at 831.607 kb on - strand, within MMP_RS04350at 831.686 kb on + strand, within MMP_RS04350at 831.789 kb on + strand, within MMP_RS04350at 831.871 kb on + strand, within MMP_RS04350at 831.893 kb on - strand, within MMP_RS04350at 831.894 kb on + strand, within MMP_RS04350at 831.894 kb on + strand, within MMP_RS04350at 831.934 kb on - strand, within MMP_RS04350at 832.045 kb on + strand, within MMP_RS04350at 832.071 kb on + strand, within MMP_RS04350at 832.175 kb on - strand, within MMP_RS04350at 832.204 kb on - strand, within MMP_RS04350at 832.208 kb on + strand, within MMP_RS04350at 832.214 kb on - strand, within MMP_RS04350at 832.214 kb on - strand, within MMP_RS04350at 832.220 kb on + strand, within MMP_RS04350at 832.234 kb on + strand, within MMP_RS04350at 832.290 kb on - strandat 832.291 kb on + strandat 832.367 kb on + strandat 832.386 kb on - strandat 832.424 kb on - strandat 832.466 kb on - strand, within MMP_RS04355at 832.483 kb on - strand, within MMP_RS04355at 832.484 kb on + strand, within MMP_RS04355at 832.489 kb on + strand, within MMP_RS04355at 832.489 kb on + strand, within MMP_RS04355at 832.501 kb on + strand, within MMP_RS04355at 832.501 kb on + strand, within MMP_RS04355at 832.503 kb on + strand, within MMP_RS04355at 832.504 kb on - strand, within MMP_RS04355at 832.504 kb on - strand, within MMP_RS04355at 832.504 kb on - strand, within MMP_RS04355at 832.505 kb on + strand, within MMP_RS04355at 832.505 kb on + strand, within MMP_RS04355at 832.509 kb on - strand, within MMP_RS04355at 832.510 kb on + strand, within MMP_RS04355at 832.510 kb on + strand, within MMP_RS04355at 832.511 kb on - strand, within MMP_RS04355at 832.544 kb on - strand, within MMP_RS04355at 832.567 kb on - strand, within MMP_RS04355at 832.567 kb on - strand, within MMP_RS04355at 832.568 kb on + strand, within MMP_RS04355at 832.568 kb on + strand, within MMP_RS04355at 832.576 kb on - strand, within MMP_RS04355at 832.576 kb on - strand, within MMP_RS04355at 832.576 kb on - strand, within MMP_RS04355at 832.576 kb on - strand, within MMP_RS04355at 832.577 kb on + strand, within MMP_RS04355at 832.578 kb on - strand, within MMP_RS04355at 832.578 kb on - strand, within MMP_RS04355at 832.578 kb on - strand, within MMP_RS04355at 832.578 kb on - strand, within MMP_RS04355at 832.695 kb on + strand, within MMP_RS04355at 832.788 kb on - strand, within MMP_RS04355at 832.788 kb on - strand, within MMP_RS04355at 832.938 kb on + strandat 832.940 kb on - strandat 832.945 kb on + strandat 832.945 kb on + strandat 832.975 kb on - strandat 832.975 kb on - strandat 832.977 kb on - strandat 832.977 kb on - strandat 832.978 kb on + strandat 832.983 kb on + strandat 833.004 kb on - strandat 833.018 kb on - strandat 833.018 kb on - strandat 833.018 kb on - strandat 833.018 kb on - strandat 833.019 kb on + strandat 833.020 kb on - strandat 833.021 kb on + strandat 833.023 kb on + strandat 833.023 kb on + strandat 833.023 kb on + strandat 833.027 kb on + strandat 833.055 kb on + strandat 833.103 kb on + strandat 833.178 kb on + strand, within MMP_RS04360at 833.216 kb on - strand, within MMP_RS04360at 833.216 kb on - strand, within MMP_RS04360at 833.308 kb on - strandat 833.415 kb on - strand, within MMP_RS04365at 833.416 kb on + strand, within MMP_RS04365at 833.447 kb on - strand, within MMP_RS04365at 833.447 kb on - strand, within MMP_RS04365at 833.447 kb on - strand, within MMP_RS04365at 833.448 kb on + strand, within MMP_RS04365at 833.461 kb on - strand, within MMP_RS04365at 833.540 kb on - strand, within MMP_RS04365at 833.542 kb on - strand, within MMP_RS04365at 833.557 kb on + strand, within MMP_RS04365at 833.565 kb on + strand, within MMP_RS04365at 833.568 kb on - strand, within MMP_RS04365at 833.579 kb on - strand, within MMP_RS04365at 833.582 kb on + strand, within MMP_RS04365at 833.592 kb on - strand, within MMP_RS04365at 833.592 kb on - strand, within MMP_RS04365at 833.593 kb on + strand, within MMP_RS04365at 833.616 kb on - strand, within MMP_RS04365at 833.616 kb on - strand, within MMP_RS04365at 833.617 kb on + strand, within MMP_RS04365at 833.645 kb on - strand, within MMP_RS04365at 833.646 kb on + strand, within MMP_RS04365at 833.646 kb on + strand, within MMP_RS04365at 833.737 kb on - strand, within MMP_RS04365at 833.842 kb on + strand, within MMP_RS04365at 833.875 kb on - strand, within MMP_RS04365at 833.886 kb on - strand, within MMP_RS04365at 833.887 kb on + strand, within MMP_RS04365at 833.887 kb on + strand, within MMP_RS04365at 833.887 kb on + strand, within MMP_RS04365at 833.910 kb on - strand, within MMP_RS04365

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with Neomycin 12.5 mM
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831,463 + MMP_RS04350 0.19 -0.6
831,463 + MMP_RS04350 0.19 +0.3
831,477 - MMP_RS04350 0.20 -0.2
831,607 - MMP_RS04350 0.32 -0.7
831,686 + MMP_RS04350 0.39 +0.3
831,789 + MMP_RS04350 0.48 -0.1
831,871 + MMP_RS04350 0.56 +0.3
831,893 - MMP_RS04350 0.58 -0.8
831,894 + MMP_RS04350 0.58 -0.5
831,894 + MMP_RS04350 0.58 -0.3
831,934 - MMP_RS04350 0.61 +0.7
832,045 + MMP_RS04350 0.71 -0.1
832,071 + MMP_RS04350 0.73 -0.4
832,175 - MMP_RS04350 0.83 -1.8
832,204 - MMP_RS04350 0.85 +0.7
832,208 + MMP_RS04350 0.86 -0.4
832,214 - MMP_RS04350 0.86 -0.3
832,214 - MMP_RS04350 0.86 -0.6
832,220 + MMP_RS04350 0.87 +0.2
832,234 + MMP_RS04350 0.88 -0.7
832,290 - -1.3
832,291 + -0.4
832,367 + +0.2
832,386 - +1.2
832,424 - +0.1
832,466 - MMP_RS04355 0.14 +0.3
832,483 - MMP_RS04355 0.17 -0.4
832,484 + MMP_RS04355 0.17 +0.1
832,489 + MMP_RS04355 0.17 +0.4
832,489 + MMP_RS04355 0.17 +0.5
832,501 + MMP_RS04355 0.19 +0.2
832,501 + MMP_RS04355 0.19 -0.2
832,503 + MMP_RS04355 0.20 +0.1
832,504 - MMP_RS04355 0.20 -0.8
832,504 - MMP_RS04355 0.20 +0.1
832,504 - MMP_RS04355 0.20 -0.4
832,505 + MMP_RS04355 0.20 +1.0
832,505 + MMP_RS04355 0.20 -0.1
832,509 - MMP_RS04355 0.21 +0.3
832,510 + MMP_RS04355 0.21 -2.0
832,510 + MMP_RS04355 0.21 +0.2
832,511 - MMP_RS04355 0.21 +0.1
832,544 - MMP_RS04355 0.27 -0.2
832,567 - MMP_RS04355 0.30 -0.5
832,567 - MMP_RS04355 0.30 -0.6
832,568 + MMP_RS04355 0.31 -0.9
832,568 + MMP_RS04355 0.31 -0.1
832,576 - MMP_RS04355 0.32 -0.3
832,576 - MMP_RS04355 0.32 -0.6
832,576 - MMP_RS04355 0.32 -0.1
832,576 - MMP_RS04355 0.32 -0.3
832,577 + MMP_RS04355 0.32 -1.0
832,578 - MMP_RS04355 0.32 -2.0
832,578 - MMP_RS04355 0.32 +0.1
832,578 - MMP_RS04355 0.32 -0.2
832,578 - MMP_RS04355 0.32 -0.0
832,695 + MMP_RS04355 0.51 -0.5
832,788 - MMP_RS04355 0.67 -0.7
832,788 - MMP_RS04355 0.67 -0.5
832,938 + -0.6
832,940 - -0.2
832,945 + +0.2
832,945 + -0.2
832,975 - -0.4
832,975 - -0.5
832,977 - +0.3
832,977 - -0.4
832,978 + -0.4
832,983 + -0.0
833,004 - +0.3
833,018 - +0.0
833,018 - -0.1
833,018 - +0.4
833,018 - +0.8
833,019 + +0.0
833,020 - -0.1
833,021 + +0.4
833,023 + -1.1
833,023 + +0.2
833,023 + +0.4
833,027 + +0.3
833,055 + -0.6
833,103 + -0.0
833,178 + MMP_RS04360 0.31 +0.2
833,216 - MMP_RS04360 0.51 -0.2
833,216 - MMP_RS04360 0.51 +0.1
833,308 - +0.2
833,415 - MMP_RS04365 0.11 -0.1
833,416 + MMP_RS04365 0.12 -0.5
833,447 - MMP_RS04365 0.16 -0.1
833,447 - MMP_RS04365 0.16 +0.2
833,447 - MMP_RS04365 0.16 -0.7
833,448 + MMP_RS04365 0.16 +0.0
833,461 - MMP_RS04365 0.18 +0.4
833,540 - MMP_RS04365 0.30 +0.4
833,542 - MMP_RS04365 0.30 -0.2
833,557 + MMP_RS04365 0.33 +0.5
833,565 + MMP_RS04365 0.34 -0.1
833,568 - MMP_RS04365 0.34 +0.5
833,579 - MMP_RS04365 0.36 -0.1
833,582 + MMP_RS04365 0.36 -0.2
833,592 - MMP_RS04365 0.38 +0.2
833,592 - MMP_RS04365 0.38 -0.6
833,593 + MMP_RS04365 0.38 -0.6
833,616 - MMP_RS04365 0.41 +1.3
833,616 - MMP_RS04365 0.41 -0.5
833,617 + MMP_RS04365 0.42 +0.1
833,645 - MMP_RS04365 0.46 +0.4
833,646 + MMP_RS04365 0.46 +0.2
833,646 + MMP_RS04365 0.46 +0.3
833,737 - MMP_RS04365 0.59 +0.5
833,842 + MMP_RS04365 0.75 +0.1
833,875 - MMP_RS04365 0.80 -0.8
833,886 - MMP_RS04365 0.82 -0.2
833,887 + MMP_RS04365 0.82 +0.6
833,887 + MMP_RS04365 0.82 +1.2
833,887 + MMP_RS04365 0.82 +0.4
833,910 - MMP_RS04365 0.85 +0.1

Or see this region's nucleotide sequence