Experiment: Formate with Neomycin 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04300 and MMP_RS04305 are separated by 281 nucleotides MMP_RS04305 and MMP_RS04310 are separated by 14 nucleotides MMP_RS04310 and MMP_RS04315 are separated by 268 nucleotides MMP_RS04315 and MMP_RS04320 are separated by 24 nucleotides
MMP_RS04300: MMP_RS04300 - hypothetical protein, at 821,649 to 821,915
_RS04300
MMP_RS04305: MMP_RS04305 - hypothetical protein, at 822,197 to 822,490
_RS04305
MMP_RS04310: MMP_RS04310 - hypothetical protein, at 822,505 to 822,849
_RS04310
MMP_RS04315: MMP_RS04315 - corrinoid protein, at 823,118 to 823,777
_RS04315
MMP_RS04320: MMP_RS04320 - uroporphyrinogen decarboxylase family protein, at 823,802 to 824,893
_RS04320
Position (kb) 822
823 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 821.545 kb on + strand at 821.549 kb on + strand at 821.561 kb on + strand at 821.564 kb on - strand at 821.564 kb on - strand at 821.564 kb on - strand at 821.564 kb on - strand at 821.565 kb on + strand at 821.565 kb on + strand at 821.565 kb on + strand at 821.565 kb on + strand at 821.565 kb on + strand at 821.565 kb on + strand at 821.566 kb on - strand at 821.566 kb on - strand at 821.566 kb on - strand at 821.566 kb on - strand at 821.567 kb on + strand at 821.567 kb on + strand at 821.567 kb on + strand at 821.596 kb on - strand at 821.596 kb on - strand at 821.596 kb on - strand at 821.597 kb on + strand at 821.597 kb on + strand at 821.597 kb on + strand at 821.615 kb on + strand at 821.668 kb on + strand at 821.668 kb on + strand at 821.668 kb on + strand at 821.685 kb on - strand, within MMP_RS04300 at 821.686 kb on + strand, within MMP_RS04300 at 821.706 kb on - strand, within MMP_RS04300 at 821.706 kb on - strand, within MMP_RS04300 at 821.718 kb on + strand, within MMP_RS04300 at 821.734 kb on - strand, within MMP_RS04300 at 821.734 kb on - strand, within MMP_RS04300 at 821.734 kb on - strand, within MMP_RS04300 at 821.735 kb on + strand, within MMP_RS04300 at 821.735 kb on + strand, within MMP_RS04300 at 821.742 kb on + strand, within MMP_RS04300 at 821.746 kb on - strand, within MMP_RS04300 at 821.761 kb on + strand, within MMP_RS04300 at 821.778 kb on + strand, within MMP_RS04300 at 821.853 kb on - strand, within MMP_RS04300 at 821.897 kb on - strand at 821.904 kb on + strand at 821.930 kb on - strand at 821.998 kb on + strand at 821.999 kb on - strand at 821.999 kb on - strand at 821.999 kb on - strand at 822.000 kb on + strand at 822.000 kb on + strand at 822.000 kb on + strand at 822.000 kb on + strand at 822.000 kb on + strand at 822.001 kb on - strand at 822.001 kb on - strand at 822.001 kb on - strand at 822.001 kb on - strand at 822.001 kb on - strand at 822.001 kb on - strand at 822.001 kb on - strand at 822.002 kb on + strand at 822.002 kb on + strand at 822.002 kb on + strand at 822.002 kb on + strand at 822.002 kb on + strand at 822.003 kb on - strand at 822.008 kb on - strand at 822.012 kb on - strand at 822.012 kb on - strand at 822.012 kb on - strand at 822.013 kb on + strand at 822.013 kb on + strand at 822.013 kb on + strand at 822.013 kb on + strand at 822.013 kb on + strand at 822.032 kb on + strand at 822.040 kb on - strand at 822.044 kb on + strand at 822.125 kb on - strand at 822.125 kb on - strand at 822.126 kb on + strand at 822.126 kb on + strand at 822.127 kb on - strand at 822.127 kb on - strand at 822.128 kb on + strand at 822.128 kb on + strand at 822.132 kb on + strand at 822.147 kb on - strand at 822.156 kb on - strand at 822.156 kb on - strand at 822.156 kb on - strand at 822.156 kb on - strand at 822.156 kb on - strand at 822.156 kb on - strand at 822.157 kb on + strand at 822.157 kb on + strand at 822.158 kb on - strand at 822.158 kb on - strand at 822.158 kb on - strand at 822.158 kb on - strand at 822.158 kb on - strand at 822.159 kb on + strand at 822.159 kb on + strand at 822.175 kb on - strand at 822.178 kb on - strand at 822.179 kb on + strand at 822.209 kb on + strand at 822.235 kb on - strand, within MMP_RS04305 at 822.384 kb on - strand, within MMP_RS04305 at 822.489 kb on + strand at 822.514 kb on - strand at 822.522 kb on - strand at 822.708 kb on - strand, within MMP_RS04310 at 822.722 kb on - strand, within MMP_RS04310 at 822.770 kb on + strand, within MMP_RS04310 at 822.770 kb on + strand, within MMP_RS04310 at 822.861 kb on + strand at 822.861 kb on + strand at 822.865 kb on + strand at 822.865 kb on + strand at 822.869 kb on - strand at 822.870 kb on + strand at 822.870 kb on + strand at 822.875 kb on + strand at 822.886 kb on - strand at 822.896 kb on - strand at 822.896 kb on - strand at 822.897 kb on + strand at 822.897 kb on + strand at 822.899 kb on - strand at 822.900 kb on + strand at 822.900 kb on + strand at 822.900 kb on + strand at 822.902 kb on + strand at 822.902 kb on + strand at 822.902 kb on + strand at 822.907 kb on - strand at 822.907 kb on - strand at 822.953 kb on - strand at 822.970 kb on - strand at 822.971 kb on + strand at 822.973 kb on + strand at 822.978 kb on + strand at 822.983 kb on + strand at 822.985 kb on - strand at 823.141 kb on + strand at 823.143 kb on - strand at 823.265 kb on + strand, within MMP_RS04315 at 823.286 kb on - strand, within MMP_RS04315 at 823.318 kb on + strand, within MMP_RS04315 at 823.340 kb on - strand, within MMP_RS04315 at 823.340 kb on - strand, within MMP_RS04315 at 823.340 kb on - strand, within MMP_RS04315 at 823.340 kb on - strand, within MMP_RS04315 at 823.341 kb on + strand, within MMP_RS04315 at 823.341 kb on + strand, within MMP_RS04315 at 823.341 kb on + strand, within MMP_RS04315 at 823.341 kb on + strand, within MMP_RS04315 at 823.360 kb on + strand, within MMP_RS04315 at 823.371 kb on - strand, within MMP_RS04315 at 823.491 kb on + strand, within MMP_RS04315 at 823.547 kb on + strand, within MMP_RS04315 at 823.645 kb on - strand, within MMP_RS04315
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with Neomycin 12.5 mM remove 821,545 + -1.9 821,549 + +0.4 821,561 + +0.2 821,564 - +0.2 821,564 - -0.8 821,564 - +0.4 821,564 - -0.2 821,565 + +0.0 821,565 + +0.8 821,565 + +0.2 821,565 + +0.8 821,565 + -0.0 821,565 + -0.0 821,566 - +0.1 821,566 - -0.7 821,566 - -0.6 821,566 - +0.0 821,567 + -0.0 821,567 + -0.2 821,567 + +0.1 821,596 - -0.6 821,596 - -0.5 821,596 - -0.4 821,597 + +0.3 821,597 + -0.3 821,597 + +0.2 821,615 + -0.3 821,668 + +0.1 821,668 + -0.0 821,668 + -0.7 821,685 - MMP_RS04300 0.13 +0.1 821,686 + MMP_RS04300 0.14 +0.5 821,706 - MMP_RS04300 0.21 -0.1 821,706 - MMP_RS04300 0.21 +0.2 821,718 + MMP_RS04300 0.26 +0.1 821,734 - MMP_RS04300 0.32 +0.5 821,734 - MMP_RS04300 0.32 +0.4 821,734 - MMP_RS04300 0.32 +0.3 821,735 + MMP_RS04300 0.32 +0.3 821,735 + MMP_RS04300 0.32 +0.3 821,742 + MMP_RS04300 0.35 -0.7 821,746 - MMP_RS04300 0.36 -0.3 821,761 + MMP_RS04300 0.42 +0.0 821,778 + MMP_RS04300 0.48 +0.2 821,853 - MMP_RS04300 0.76 +0.5 821,897 - -0.3 821,904 + -0.1 821,930 - -0.3 821,998 + -0.4 821,999 - +0.1 821,999 - -0.0 821,999 - -0.2 822,000 + -0.0 822,000 + -0.9 822,000 + -0.1 822,000 + -0.4 822,000 + +0.7 822,001 - +0.3 822,001 - -0.1 822,001 - +0.4 822,001 - -0.5 822,001 - -0.8 822,001 - +0.2 822,001 - +0.0 822,002 + -0.8 822,002 + -0.6 822,002 + -0.0 822,002 + -0.7 822,002 + +0.1 822,003 - +0.2 822,008 - -0.1 822,012 - +0.4 822,012 - +0.6 822,012 - +3.7 822,013 + -0.1 822,013 + +0.3 822,013 + -0.4 822,013 + +1.3 822,013 + -0.7 822,032 + -0.2 822,040 - +0.2 822,044 + +0.4 822,125 - -1.0 822,125 - -0.4 822,126 + -0.9 822,126 + +0.1 822,127 - +0.4 822,127 - -0.1 822,128 + -0.2 822,128 + +0.0 822,132 + +0.1 822,147 - -0.3 822,156 - +0.2 822,156 - -0.1 822,156 - -0.0 822,156 - +0.7 822,156 - -0.2 822,156 - +2.2 822,157 + +0.3 822,157 + -0.1 822,158 - +0.1 822,158 - +0.1 822,158 - +0.3 822,158 - -0.1 822,158 - -0.0 822,159 + -0.1 822,159 + -0.1 822,175 - -0.4 822,178 - +0.1 822,179 + +0.1 822,209 + -0.3 822,235 - MMP_RS04305 0.13 -0.6 822,384 - MMP_RS04305 0.64 +0.7 822,489 + +0.1 822,514 - -0.5 822,522 - +0.2 822,708 - MMP_RS04310 0.59 -0.3 822,722 - MMP_RS04310 0.63 +0.1 822,770 + MMP_RS04310 0.77 -0.2 822,770 + MMP_RS04310 0.77 -0.5 822,861 + +0.0 822,861 + +0.2 822,865 + +0.5 822,865 + -0.3 822,869 - -0.3 822,870 + -0.1 822,870 + +0.2 822,875 + -0.3 822,886 - -0.5 822,896 - +0.8 822,896 - +0.2 822,897 + +0.1 822,897 + -0.5 822,899 - +0.1 822,900 + -0.0 822,900 + -0.3 822,900 + -0.0 822,902 + -0.4 822,902 + +0.6 822,902 + +0.7 822,907 - +4.9 822,907 - +0.2 822,953 - -0.3 822,970 - -0.1 822,971 + +0.2 822,973 + +0.8 822,978 + -0.0 822,983 + +0.1 822,985 - -0.2 823,141 + +0.0 823,143 - -0.4 823,265 + MMP_RS04315 0.22 +0.2 823,286 - MMP_RS04315 0.25 -0.0 823,318 + MMP_RS04315 0.30 -0.9 823,340 - MMP_RS04315 0.34 -0.1 823,340 - MMP_RS04315 0.34 -0.1 823,340 - MMP_RS04315 0.34 +0.1 823,340 - MMP_RS04315 0.34 +0.3 823,341 + MMP_RS04315 0.34 +0.8 823,341 + MMP_RS04315 0.34 +0.2 823,341 + MMP_RS04315 0.34 -0.5 823,341 + MMP_RS04315 0.34 -0.1 823,360 + MMP_RS04315 0.37 -0.3 823,371 - MMP_RS04315 0.38 +0.2 823,491 + MMP_RS04315 0.57 -0.1 823,547 + MMP_RS04315 0.65 +0.0 823,645 - MMP_RS04315 0.80 +0.0
Or see this region's nucleotide sequence