Experiment: Formate with Neomycin 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04260 and MMP_RS04265 are separated by 10 nucleotides MMP_RS04265 and MMP_RS04270 are separated by 13 nucleotides MMP_RS04270 and MMP_RS04275 are separated by 358 nucleotides MMP_RS04275 and MMP_RS04280 are separated by 16 nucleotides
MMP_RS04260: MMP_RS04260 - coenzyme F420 hydrogenase subunit gamma, at 812,509 to 813,237
_RS04260
MMP_RS04265: MMP_RS04265 - coenzyme F420-reducing hydrogenase FrhD protein, at 813,248 to 813,748
_RS04265
MMP_RS04270: MMP_RS04270 - coenzyme F420 hydrogenase subunit alpha, at 813,762 to 814,994
_RS04270
MMP_RS04275: MMP_RS04275 - hydrogenase iron-sulfur subunit, at 815,353 to 815,775
_RS04275
MMP_RS04280: MMP_RS04280 - coenzyme F420-non-reducing hydrogenase subunit gamma, at 815,792 to 816,694
_RS04280
Position (kb) 813
814
815 Strain fitness (log2 ratio) -1
0
1
2 at 812.913 kb on - strand, within MMP_RS04260 at 812.913 kb on - strand, within MMP_RS04260 at 813.010 kb on - strand, within MMP_RS04260 at 813.133 kb on - strand, within MMP_RS04260 at 813.569 kb on - strand, within MMP_RS04265 at 813.570 kb on + strand, within MMP_RS04265 at 813.696 kb on + strand, within MMP_RS04265 at 813.764 kb on + strand at 813.768 kb on - strand at 813.769 kb on + strand at 813.813 kb on - strand at 813.943 kb on - strand, within MMP_RS04270 at 813.947 kb on - strand, within MMP_RS04270 at 814.144 kb on + strand, within MMP_RS04270 at 814.225 kb on - strand, within MMP_RS04270 at 814.238 kb on - strand, within MMP_RS04270 at 814.252 kb on + strand, within MMP_RS04270 at 814.280 kb on + strand, within MMP_RS04270 at 814.568 kb on - strand, within MMP_RS04270 at 814.568 kb on - strand, within MMP_RS04270 at 814.618 kb on - strand, within MMP_RS04270 at 814.641 kb on - strand, within MMP_RS04270 at 814.659 kb on - strand, within MMP_RS04270 at 814.770 kb on - strand, within MMP_RS04270 at 814.890 kb on - strand at 814.894 kb on - strand at 814.895 kb on + strand at 815.283 kb on + strand at 815.407 kb on - strand, within MMP_RS04275 at 815.407 kb on - strand, within MMP_RS04275 at 815.422 kb on + strand, within MMP_RS04275 at 815.436 kb on - strand, within MMP_RS04275 at 815.446 kb on - strand, within MMP_RS04275 at 815.460 kb on + strand, within MMP_RS04275 at 815.465 kb on - strand, within MMP_RS04275 at 815.465 kb on - strand, within MMP_RS04275 at 815.510 kb on - strand, within MMP_RS04275 at 815.521 kb on + strand, within MMP_RS04275 at 815.621 kb on + strand, within MMP_RS04275 at 815.706 kb on - strand, within MMP_RS04275 at 815.770 kb on + strand at 815.778 kb on + strand at 815.778 kb on + strand at 815.781 kb on + strand at 815.781 kb on + strand at 815.781 kb on + strand at 815.781 kb on + strand at 815.807 kb on + strand at 815.807 kb on + strand at 815.841 kb on - strand at 815.841 kb on - strand at 815.842 kb on + strand at 815.856 kb on - strand at 815.856 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with Neomycin 12.5 mM remove 812,913 - MMP_RS04260 0.55 +0.0 812,913 - MMP_RS04260 0.55 -0.8 813,010 - MMP_RS04260 0.69 -0.4 813,133 - MMP_RS04260 0.86 +0.3 813,569 - MMP_RS04265 0.64 -0.3 813,570 + MMP_RS04265 0.64 +0.4 813,696 + MMP_RS04265 0.89 +0.2 813,764 + -0.7 813,768 - +0.2 813,769 + +0.3 813,813 - -0.3 813,943 - MMP_RS04270 0.15 +0.2 813,947 - MMP_RS04270 0.15 -0.2 814,144 + MMP_RS04270 0.31 -0.3 814,225 - MMP_RS04270 0.38 +0.4 814,238 - MMP_RS04270 0.39 -0.0 814,252 + MMP_RS04270 0.40 +0.1 814,280 + MMP_RS04270 0.42 -0.2 814,568 - MMP_RS04270 0.65 -0.7 814,568 - MMP_RS04270 0.65 -0.2 814,618 - MMP_RS04270 0.69 +0.0 814,641 - MMP_RS04270 0.71 -0.3 814,659 - MMP_RS04270 0.73 -0.2 814,770 - MMP_RS04270 0.82 -0.8 814,890 - -0.5 814,894 - +0.1 814,895 + -0.6 815,283 + -0.1 815,407 - MMP_RS04275 0.13 -0.6 815,407 - MMP_RS04275 0.13 -0.0 815,422 + MMP_RS04275 0.16 -0.1 815,436 - MMP_RS04275 0.20 -0.4 815,446 - MMP_RS04275 0.22 -0.1 815,460 + MMP_RS04275 0.25 -0.3 815,465 - MMP_RS04275 0.26 -0.5 815,465 - MMP_RS04275 0.26 +0.2 815,510 - MMP_RS04275 0.37 +2.1 815,521 + MMP_RS04275 0.40 -1.0 815,621 + MMP_RS04275 0.63 +0.0 815,706 - MMP_RS04275 0.83 +0.0 815,770 + -0.1 815,778 + +0.1 815,778 + -0.6 815,781 + +0.2 815,781 + -0.5 815,781 + -0.1 815,781 + -1.2 815,807 + -0.2 815,807 + -0.5 815,841 - +0.1 815,841 - +0.1 815,842 + +0.1 815,856 - -0.2 815,856 - +0.4
Or see this region's nucleotide sequence