Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04210

Experiment: Formate with Neomycin 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04205 and MMP_RS04210 are separated by 145 nucleotidesMMP_RS04210 and MMP_RS04215 are separated by 11 nucleotidesMMP_RS04215 and MMP_RS04220 are separated by 48 nucleotides MMP_RS04205: MMP_RS04205 - carboxymuconolactone decarboxylase family protein, at 799,477 to 800,229 _RS04205 MMP_RS04210: MMP_RS04210 - aldo/keto reductase, at 800,375 to 801,568 _RS04210 MMP_RS04215: MMP_RS04215 - nickel pincer cofactor biosynthesis protein LarB, at 801,580 to 802,365 _RS04215 MMP_RS04220: MMP_RS04220 - queuosine precursor transporter, at 802,414 to 803,022 _RS04220 Position (kb) 800 801 802Strain fitness (log2 ratio) -1 0 1at 799.470 kb on - strandat 799.630 kb on + strand, within MMP_RS04205at 799.684 kb on + strand, within MMP_RS04205at 799.762 kb on - strand, within MMP_RS04205at 799.763 kb on + strand, within MMP_RS04205at 799.763 kb on + strand, within MMP_RS04205at 799.814 kb on - strand, within MMP_RS04205at 799.854 kb on - strand, within MMP_RS04205at 799.972 kb on - strand, within MMP_RS04205at 800.167 kb on - strandat 800.167 kb on - strandat 800.171 kb on - strandat 800.171 kb on - strandat 800.217 kb on + strandat 800.247 kb on + strandat 800.247 kb on + strandat 800.261 kb on + strandat 800.266 kb on - strandat 800.267 kb on + strandat 800.270 kb on + strandat 800.294 kb on - strandat 800.295 kb on + strandat 800.295 kb on + strandat 800.295 kb on + strandat 800.295 kb on + strandat 800.297 kb on + strandat 800.297 kb on + strandat 800.300 kb on - strandat 800.308 kb on - strandat 800.309 kb on + strandat 800.309 kb on + strandat 800.309 kb on + strandat 800.309 kb on + strandat 800.309 kb on + strandat 800.309 kb on + strandat 800.309 kb on + strandat 800.312 kb on - strandat 800.313 kb on + strandat 800.315 kb on - strandat 800.315 kb on - strandat 800.315 kb on - strandat 800.315 kb on - strandat 800.317 kb on - strandat 800.317 kb on - strandat 800.318 kb on + strandat 800.318 kb on + strandat 800.341 kb on + strandat 800.351 kb on - strandat 800.352 kb on + strandat 800.354 kb on - strandat 800.355 kb on + strandat 800.357 kb on + strandat 800.381 kb on - strandat 800.381 kb on - strandat 800.382 kb on + strandat 800.434 kb on - strandat 800.671 kb on + strand, within MMP_RS04210at 800.719 kb on + strand, within MMP_RS04210at 800.871 kb on + strand, within MMP_RS04210at 800.872 kb on - strand, within MMP_RS04210at 800.873 kb on + strand, within MMP_RS04210at 800.873 kb on + strand, within MMP_RS04210at 800.892 kb on - strand, within MMP_RS04210at 800.892 kb on - strand, within MMP_RS04210at 800.892 kb on - strand, within MMP_RS04210at 800.893 kb on + strand, within MMP_RS04210at 800.893 kb on + strand, within MMP_RS04210at 800.893 kb on + strand, within MMP_RS04210at 800.899 kb on - strand, within MMP_RS04210at 800.899 kb on - strand, within MMP_RS04210at 800.899 kb on - strand, within MMP_RS04210at 800.900 kb on + strand, within MMP_RS04210at 800.900 kb on + strand, within MMP_RS04210at 800.903 kb on - strand, within MMP_RS04210at 800.903 kb on - strand, within MMP_RS04210at 800.904 kb on + strand, within MMP_RS04210at 800.904 kb on + strand, within MMP_RS04210at 800.941 kb on - strand, within MMP_RS04210at 801.003 kb on - strand, within MMP_RS04210at 801.010 kb on - strand, within MMP_RS04210at 801.037 kb on + strand, within MMP_RS04210at 801.069 kb on - strand, within MMP_RS04210at 801.232 kb on + strand, within MMP_RS04210at 801.257 kb on + strand, within MMP_RS04210at 801.257 kb on + strand, within MMP_RS04210at 801.262 kb on - strand, within MMP_RS04210at 801.326 kb on - strand, within MMP_RS04210at 801.326 kb on - strand, within MMP_RS04210at 801.326 kb on - strand, within MMP_RS04210at 801.391 kb on - strand, within MMP_RS04210at 801.392 kb on + strand, within MMP_RS04210at 801.394 kb on + strand, within MMP_RS04210at 801.442 kb on - strand, within MMP_RS04210at 801.467 kb on - strandat 801.467 kb on - strandat 801.467 kb on - strandat 801.468 kb on + strandat 801.468 kb on + strandat 801.597 kb on + strandat 801.608 kb on - strandat 801.648 kb on - strandat 801.665 kb on + strand, within MMP_RS04215at 801.687 kb on - strand, within MMP_RS04215at 801.696 kb on - strand, within MMP_RS04215at 801.696 kb on - strand, within MMP_RS04215at 801.697 kb on + strand, within MMP_RS04215at 801.697 kb on + strand, within MMP_RS04215at 801.895 kb on + strand, within MMP_RS04215at 802.035 kb on + strand, within MMP_RS04215at 802.035 kb on + strand, within MMP_RS04215at 802.037 kb on + strand, within MMP_RS04215at 802.037 kb on + strand, within MMP_RS04215at 802.265 kb on - strand, within MMP_RS04215at 802.407 kb on + strandat 802.443 kb on + strandat 802.445 kb on + strandat 802.469 kb on + strandat 802.474 kb on + strandat 802.529 kb on + strand, within MMP_RS04220

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with Neomycin 12.5 mM
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799,470 - +0.3
799,630 + MMP_RS04205 0.20 -0.6
799,684 + MMP_RS04205 0.27 -0.7
799,762 - MMP_RS04205 0.38 -0.6
799,763 + MMP_RS04205 0.38 -0.7
799,763 + MMP_RS04205 0.38 +0.0
799,814 - MMP_RS04205 0.45 +1.0
799,854 - MMP_RS04205 0.50 -0.4
799,972 - MMP_RS04205 0.66 -0.2
800,167 - -0.3
800,167 - -0.2
800,171 - -0.3
800,171 - -0.0
800,217 + -0.1
800,247 + +0.0
800,247 + -0.8
800,261 + +0.3
800,266 - -0.1
800,267 + -0.6
800,270 + -1.0
800,294 - -0.1
800,295 + -0.1
800,295 + +0.1
800,295 + -0.4
800,295 + +0.4
800,297 + +0.5
800,297 + +0.3
800,300 - +0.3
800,308 - -0.4
800,309 + +0.1
800,309 + -1.2
800,309 + -0.9
800,309 + -0.3
800,309 + -0.2
800,309 + +0.1
800,309 + -0.6
800,312 - -0.4
800,313 + -0.7
800,315 - -0.7
800,315 - -1.5
800,315 - +0.1
800,315 - -0.6
800,317 - +0.0
800,317 - -0.1
800,318 + +0.0
800,318 + +0.3
800,341 + +0.2
800,351 - +0.7
800,352 + +0.2
800,354 - +0.1
800,355 + -0.9
800,357 + +0.9
800,381 - -0.3
800,381 - -0.5
800,382 + +0.3
800,434 - -1.1
800,671 + MMP_RS04210 0.25 +1.0
800,719 + MMP_RS04210 0.29 -0.0
800,871 + MMP_RS04210 0.42 +0.1
800,872 - MMP_RS04210 0.42 -1.0
800,873 + MMP_RS04210 0.42 -0.2
800,873 + MMP_RS04210 0.42 +0.0
800,892 - MMP_RS04210 0.43 -0.5
800,892 - MMP_RS04210 0.43 -0.2
800,892 - MMP_RS04210 0.43 -0.7
800,893 + MMP_RS04210 0.43 +0.1
800,893 + MMP_RS04210 0.43 -0.1
800,893 + MMP_RS04210 0.43 +0.0
800,899 - MMP_RS04210 0.44 -0.3
800,899 - MMP_RS04210 0.44 -0.2
800,899 - MMP_RS04210 0.44 -0.2
800,900 + MMP_RS04210 0.44 +0.1
800,900 + MMP_RS04210 0.44 -0.0
800,903 - MMP_RS04210 0.44 +0.5
800,903 - MMP_RS04210 0.44 -0.1
800,904 + MMP_RS04210 0.44 -1.6
800,904 + MMP_RS04210 0.44 -0.6
800,941 - MMP_RS04210 0.47 -0.6
801,003 - MMP_RS04210 0.53 -0.2
801,010 - MMP_RS04210 0.53 +0.0
801,037 + MMP_RS04210 0.55 +0.5
801,069 - MMP_RS04210 0.58 -0.3
801,232 + MMP_RS04210 0.72 +0.6
801,257 + MMP_RS04210 0.74 -0.3
801,257 + MMP_RS04210 0.74 -0.7
801,262 - MMP_RS04210 0.74 -1.3
801,326 - MMP_RS04210 0.80 -1.1
801,326 - MMP_RS04210 0.80 +0.2
801,326 - MMP_RS04210 0.80 -0.1
801,391 - MMP_RS04210 0.85 -0.5
801,392 + MMP_RS04210 0.85 +0.3
801,394 + MMP_RS04210 0.85 -0.2
801,442 - MMP_RS04210 0.89 -0.0
801,467 - +0.7
801,467 - -0.3
801,467 - -0.5
801,468 + +0.2
801,468 + +0.0
801,597 + -0.6
801,608 - +0.2
801,648 - -0.4
801,665 + MMP_RS04215 0.11 -1.7
801,687 - MMP_RS04215 0.14 -0.3
801,696 - MMP_RS04215 0.15 +0.3
801,696 - MMP_RS04215 0.15 -0.2
801,697 + MMP_RS04215 0.15 +0.1
801,697 + MMP_RS04215 0.15 -0.7
801,895 + MMP_RS04215 0.40 -0.3
802,035 + MMP_RS04215 0.58 +0.1
802,035 + MMP_RS04215 0.58 +0.1
802,037 + MMP_RS04215 0.58 +0.1
802,037 + MMP_RS04215 0.58 +0.0
802,265 - MMP_RS04215 0.87 -0.1
802,407 + -0.6
802,443 + +0.1
802,445 + +0.4
802,469 + +0.2
802,474 + -0.5
802,529 + MMP_RS04220 0.19 -0.6

Or see this region's nucleotide sequence