Experiment: Formate with Neomycin 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04195 and MMP_RS04200 are separated by 30 nucleotides MMP_RS04200 and MMP_RS04205 are separated by 130 nucleotides MMP_RS04205 and MMP_RS04210 are separated by 145 nucleotides
MMP_RS04195: MMP_RS04195 - flavodoxin, at 798,060 to 798,596
_RS04195
MMP_RS04200: MMP_RS04200 - DUF111 family protein, at 798,627 to 799,346
_RS04200
MMP_RS04205: MMP_RS04205 - carboxymuconolactone decarboxylase family protein, at 799,477 to 800,229
_RS04205
MMP_RS04210: MMP_RS04210 - aldo/keto reductase, at 800,375 to 801,568
_RS04210
Position (kb) 799
800
801 Strain fitness (log2 ratio) -1
0
1 at 798.508 kb on - strand, within MMP_RS04195 at 798.511 kb on - strand, within MMP_RS04195 at 798.574 kb on - strand at 798.578 kb on - strand at 798.579 kb on + strand at 798.608 kb on + strand at 798.612 kb on + strand at 798.622 kb on - strand at 798.623 kb on + strand at 798.639 kb on + strand at 798.687 kb on + strand at 798.687 kb on + strand at 798.743 kb on + strand, within MMP_RS04200 at 798.759 kb on + strand, within MMP_RS04200 at 798.782 kb on - strand, within MMP_RS04200 at 798.806 kb on - strand, within MMP_RS04200 at 798.807 kb on + strand, within MMP_RS04200 at 798.837 kb on - strand, within MMP_RS04200 at 798.858 kb on + strand, within MMP_RS04200 at 798.886 kb on - strand, within MMP_RS04200 at 799.090 kb on - strand, within MMP_RS04200 at 799.215 kb on + strand, within MMP_RS04200 at 799.219 kb on - strand, within MMP_RS04200 at 799.273 kb on - strand, within MMP_RS04200 at 799.470 kb on - strand at 799.630 kb on + strand, within MMP_RS04205 at 799.684 kb on + strand, within MMP_RS04205 at 799.762 kb on - strand, within MMP_RS04205 at 799.763 kb on + strand, within MMP_RS04205 at 799.763 kb on + strand, within MMP_RS04205 at 799.814 kb on - strand, within MMP_RS04205 at 799.854 kb on - strand, within MMP_RS04205 at 799.972 kb on - strand, within MMP_RS04205 at 800.167 kb on - strand at 800.167 kb on - strand at 800.171 kb on - strand at 800.171 kb on - strand at 800.217 kb on + strand at 800.247 kb on + strand at 800.247 kb on + strand at 800.261 kb on + strand at 800.266 kb on - strand at 800.267 kb on + strand at 800.270 kb on + strand at 800.294 kb on - strand at 800.295 kb on + strand at 800.295 kb on + strand at 800.295 kb on + strand at 800.295 kb on + strand at 800.297 kb on + strand at 800.297 kb on + strand at 800.300 kb on - strand at 800.308 kb on - strand at 800.309 kb on + strand at 800.309 kb on + strand at 800.309 kb on + strand at 800.309 kb on + strand at 800.309 kb on + strand at 800.309 kb on + strand at 800.309 kb on + strand at 800.312 kb on - strand at 800.313 kb on + strand at 800.315 kb on - strand at 800.315 kb on - strand at 800.315 kb on - strand at 800.315 kb on - strand at 800.317 kb on - strand at 800.317 kb on - strand at 800.318 kb on + strand at 800.318 kb on + strand at 800.341 kb on + strand at 800.351 kb on - strand at 800.352 kb on + strand at 800.354 kb on - strand at 800.355 kb on + strand at 800.357 kb on + strand at 800.381 kb on - strand at 800.381 kb on - strand at 800.382 kb on + strand at 800.434 kb on - strand at 800.671 kb on + strand, within MMP_RS04210 at 800.719 kb on + strand, within MMP_RS04210 at 800.871 kb on + strand, within MMP_RS04210 at 800.872 kb on - strand, within MMP_RS04210 at 800.873 kb on + strand, within MMP_RS04210 at 800.873 kb on + strand, within MMP_RS04210 at 800.892 kb on - strand, within MMP_RS04210 at 800.892 kb on - strand, within MMP_RS04210 at 800.892 kb on - strand, within MMP_RS04210 at 800.893 kb on + strand, within MMP_RS04210 at 800.893 kb on + strand, within MMP_RS04210 at 800.893 kb on + strand, within MMP_RS04210 at 800.899 kb on - strand, within MMP_RS04210 at 800.899 kb on - strand, within MMP_RS04210 at 800.899 kb on - strand, within MMP_RS04210 at 800.900 kb on + strand, within MMP_RS04210 at 800.900 kb on + strand, within MMP_RS04210 at 800.903 kb on - strand, within MMP_RS04210 at 800.903 kb on - strand, within MMP_RS04210 at 800.904 kb on + strand, within MMP_RS04210 at 800.904 kb on + strand, within MMP_RS04210 at 800.941 kb on - strand, within MMP_RS04210 at 801.003 kb on - strand, within MMP_RS04210 at 801.010 kb on - strand, within MMP_RS04210 at 801.037 kb on + strand, within MMP_RS04210 at 801.069 kb on - strand, within MMP_RS04210
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with Neomycin 12.5 mM remove 798,508 - MMP_RS04195 0.83 -0.3 798,511 - MMP_RS04195 0.84 +0.1 798,574 - -0.3 798,578 - -0.4 798,579 + +0.0 798,608 + -0.2 798,612 + -0.4 798,622 - +0.2 798,623 + -0.4 798,639 + +0.2 798,687 + -0.5 798,687 + -0.2 798,743 + MMP_RS04200 0.16 -0.1 798,759 + MMP_RS04200 0.18 -0.7 798,782 - MMP_RS04200 0.22 +0.7 798,806 - MMP_RS04200 0.25 -0.4 798,807 + MMP_RS04200 0.25 +0.5 798,837 - MMP_RS04200 0.29 -0.4 798,858 + MMP_RS04200 0.32 -0.2 798,886 - MMP_RS04200 0.36 +0.1 799,090 - MMP_RS04200 0.64 -0.4 799,215 + MMP_RS04200 0.82 -0.0 799,219 - MMP_RS04200 0.82 -0.3 799,273 - MMP_RS04200 0.90 +1.2 799,470 - +0.3 799,630 + MMP_RS04205 0.20 -0.6 799,684 + MMP_RS04205 0.27 -0.7 799,762 - MMP_RS04205 0.38 -0.6 799,763 + MMP_RS04205 0.38 -0.7 799,763 + MMP_RS04205 0.38 +0.0 799,814 - MMP_RS04205 0.45 +1.0 799,854 - MMP_RS04205 0.50 -0.4 799,972 - MMP_RS04205 0.66 -0.2 800,167 - -0.3 800,167 - -0.2 800,171 - -0.3 800,171 - -0.0 800,217 + -0.1 800,247 + +0.0 800,247 + -0.8 800,261 + +0.3 800,266 - -0.1 800,267 + -0.6 800,270 + -1.0 800,294 - -0.1 800,295 + -0.1 800,295 + +0.1 800,295 + -0.4 800,295 + +0.4 800,297 + +0.5 800,297 + +0.3 800,300 - +0.3 800,308 - -0.4 800,309 + +0.1 800,309 + -1.2 800,309 + -0.9 800,309 + -0.3 800,309 + -0.2 800,309 + +0.1 800,309 + -0.6 800,312 - -0.4 800,313 + -0.7 800,315 - -0.7 800,315 - -1.5 800,315 - +0.1 800,315 - -0.6 800,317 - +0.0 800,317 - -0.1 800,318 + +0.0 800,318 + +0.3 800,341 + +0.2 800,351 - +0.7 800,352 + +0.2 800,354 - +0.1 800,355 + -0.9 800,357 + +0.9 800,381 - -0.3 800,381 - -0.5 800,382 + +0.3 800,434 - -1.1 800,671 + MMP_RS04210 0.25 +1.0 800,719 + MMP_RS04210 0.29 -0.0 800,871 + MMP_RS04210 0.42 +0.1 800,872 - MMP_RS04210 0.42 -1.0 800,873 + MMP_RS04210 0.42 -0.2 800,873 + MMP_RS04210 0.42 +0.0 800,892 - MMP_RS04210 0.43 -0.5 800,892 - MMP_RS04210 0.43 -0.2 800,892 - MMP_RS04210 0.43 -0.7 800,893 + MMP_RS04210 0.43 +0.1 800,893 + MMP_RS04210 0.43 -0.1 800,893 + MMP_RS04210 0.43 +0.0 800,899 - MMP_RS04210 0.44 -0.3 800,899 - MMP_RS04210 0.44 -0.2 800,899 - MMP_RS04210 0.44 -0.2 800,900 + MMP_RS04210 0.44 +0.1 800,900 + MMP_RS04210 0.44 -0.0 800,903 - MMP_RS04210 0.44 +0.5 800,903 - MMP_RS04210 0.44 -0.1 800,904 + MMP_RS04210 0.44 -1.6 800,904 + MMP_RS04210 0.44 -0.6 800,941 - MMP_RS04210 0.47 -0.6 801,003 - MMP_RS04210 0.53 -0.2 801,010 - MMP_RS04210 0.53 +0.0 801,037 + MMP_RS04210 0.55 +0.5 801,069 - MMP_RS04210 0.58 -0.3
Or see this region's nucleotide sequence