Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04185

Experiment: Formate with Neomycin 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04180 and MMP_RS04185 are separated by 11 nucleotidesMMP_RS04185 and MMP_RS04190 are separated by 87 nucleotidesMMP_RS04190 and MMP_RS04195 are separated by 217 nucleotides MMP_RS04180: MMP_RS04180 - iron-containing alcohol dehydrogenase, at 794,946 to 796,115 _RS04180 MMP_RS04185: MMP_RS04185 - aldo/keto reductase, at 796,127 to 797,239 _RS04185 MMP_RS04190: MMP_RS04190 - hypothetical protein, at 797,327 to 797,842 _RS04190 MMP_RS04195: MMP_RS04195 - flavodoxin, at 798,060 to 798,596 _RS04195 Position (kb) 796 797 798Strain fitness (log2 ratio) -1 0 1at 795.133 kb on - strand, within MMP_RS04180at 795.134 kb on + strand, within MMP_RS04180at 795.371 kb on - strand, within MMP_RS04180at 795.372 kb on + strand, within MMP_RS04180at 795.565 kb on + strand, within MMP_RS04180at 795.565 kb on + strand, within MMP_RS04180at 795.568 kb on - strand, within MMP_RS04180at 795.600 kb on - strand, within MMP_RS04180at 795.600 kb on - strand, within MMP_RS04180at 795.600 kb on - strand, within MMP_RS04180at 795.601 kb on + strand, within MMP_RS04180at 795.601 kb on + strand, within MMP_RS04180at 795.850 kb on - strand, within MMP_RS04180at 795.851 kb on + strand, within MMP_RS04180at 795.883 kb on - strand, within MMP_RS04180at 795.940 kb on - strand, within MMP_RS04180at 795.968 kb on - strand, within MMP_RS04180at 795.969 kb on + strand, within MMP_RS04180at 795.982 kb on + strand, within MMP_RS04180at 795.989 kb on - strand, within MMP_RS04180at 796.050 kb on + strandat 796.069 kb on - strandat 796.070 kb on + strandat 796.108 kb on + strandat 796.169 kb on + strandat 796.236 kb on + strandat 796.278 kb on + strand, within MMP_RS04185at 796.304 kb on + strand, within MMP_RS04185at 796.333 kb on - strand, within MMP_RS04185at 796.333 kb on - strand, within MMP_RS04185at 796.347 kb on - strand, within MMP_RS04185at 796.347 kb on - strand, within MMP_RS04185at 796.445 kb on + strand, within MMP_RS04185at 796.448 kb on + strand, within MMP_RS04185at 796.600 kb on - strand, within MMP_RS04185at 796.635 kb on - strand, within MMP_RS04185at 796.861 kb on + strand, within MMP_RS04185at 796.881 kb on - strand, within MMP_RS04185at 796.916 kb on - strand, within MMP_RS04185at 796.919 kb on - strand, within MMP_RS04185at 797.002 kb on - strand, within MMP_RS04185at 797.047 kb on + strand, within MMP_RS04185at 797.055 kb on + strand, within MMP_RS04185at 797.099 kb on - strand, within MMP_RS04185at 797.100 kb on + strand, within MMP_RS04185at 797.172 kb on - strandat 797.273 kb on - strandat 797.305 kb on + strandat 797.361 kb on - strandat 797.362 kb on + strandat 797.362 kb on + strandat 797.362 kb on + strandat 797.365 kb on + strandat 797.403 kb on + strand, within MMP_RS04190at 797.536 kb on + strand, within MMP_RS04190at 797.597 kb on + strand, within MMP_RS04190at 797.709 kb on + strand, within MMP_RS04190at 797.723 kb on - strand, within MMP_RS04190at 797.728 kb on - strand, within MMP_RS04190at 797.728 kb on - strand, within MMP_RS04190at 797.810 kb on + strandat 797.810 kb on + strandat 797.818 kb on - strandat 797.821 kb on + strandat 797.821 kb on + strandat 797.859 kb on - strandat 797.959 kb on + strandat 797.959 kb on + strandat 798.002 kb on + strandat 798.090 kb on + strandat 798.090 kb on + strandat 798.179 kb on + strand, within MMP_RS04195

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with Neomycin 12.5 mM
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795,133 - MMP_RS04180 0.16 -0.3
795,134 + MMP_RS04180 0.16 +0.2
795,371 - MMP_RS04180 0.36 -0.5
795,372 + MMP_RS04180 0.36 +0.8
795,565 + MMP_RS04180 0.53 -0.1
795,565 + MMP_RS04180 0.53 -0.1
795,568 - MMP_RS04180 0.53 +0.2
795,600 - MMP_RS04180 0.56 -0.1
795,600 - MMP_RS04180 0.56 -0.8
795,600 - MMP_RS04180 0.56 -0.0
795,601 + MMP_RS04180 0.56 +0.4
795,601 + MMP_RS04180 0.56 +0.0
795,850 - MMP_RS04180 0.77 +0.5
795,851 + MMP_RS04180 0.77 -1.2
795,883 - MMP_RS04180 0.80 +0.7
795,940 - MMP_RS04180 0.85 -0.2
795,968 - MMP_RS04180 0.87 -0.0
795,969 + MMP_RS04180 0.87 -0.5
795,982 + MMP_RS04180 0.89 +0.3
795,989 - MMP_RS04180 0.89 +0.1
796,050 + +0.3
796,069 - -0.3
796,070 + +0.4
796,108 + +0.5
796,169 + +0.3
796,236 + +0.1
796,278 + MMP_RS04185 0.14 +0.6
796,304 + MMP_RS04185 0.16 -0.6
796,333 - MMP_RS04185 0.19 +0.1
796,333 - MMP_RS04185 0.19 -0.0
796,347 - MMP_RS04185 0.20 -0.5
796,347 - MMP_RS04185 0.20 -0.3
796,445 + MMP_RS04185 0.29 +0.1
796,448 + MMP_RS04185 0.29 -0.1
796,600 - MMP_RS04185 0.42 -0.9
796,635 - MMP_RS04185 0.46 -0.1
796,861 + MMP_RS04185 0.66 -0.4
796,881 - MMP_RS04185 0.68 -0.1
796,916 - MMP_RS04185 0.71 -0.3
796,919 - MMP_RS04185 0.71 +0.6
797,002 - MMP_RS04185 0.79 -0.0
797,047 + MMP_RS04185 0.83 -0.4
797,055 + MMP_RS04185 0.83 -0.9
797,099 - MMP_RS04185 0.87 -0.0
797,100 + MMP_RS04185 0.87 -0.3
797,172 - -0.1
797,273 - -0.7
797,305 + +0.1
797,361 - -0.1
797,362 + -0.5
797,362 + -0.0
797,362 + +0.1
797,365 + -0.3
797,403 + MMP_RS04190 0.15 -0.3
797,536 + MMP_RS04190 0.41 -0.5
797,597 + MMP_RS04190 0.52 -0.3
797,709 + MMP_RS04190 0.74 -0.3
797,723 - MMP_RS04190 0.77 -0.0
797,728 - MMP_RS04190 0.78 -0.8
797,728 - MMP_RS04190 0.78 -0.7
797,810 + -0.2
797,810 + -0.1
797,818 - +0.3
797,821 + +0.5
797,821 + -1.0
797,859 - -0.3
797,959 + +0.3
797,959 + +0.3
798,002 + -0.6
798,090 + -0.1
798,090 + +0.2
798,179 + MMP_RS04195 0.22 +0.3

Or see this region's nucleotide sequence