Experiment: Formate with Neomycin 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04110 and MMP_RS04115 are separated by 615 nucleotides MMP_RS04115 and MMP_RS04120 are separated by 373 nucleotides
MMP_RS04110: MMP_RS04110 - methyl-accepting chemotaxis protein, at 778,782 to 780,980
_RS04110
MMP_RS04115: MMP_RS04115 - cytosine permease, at 781,596 to 782,831
_RS04115
MMP_RS04120: MMP_RS04120 - hypothetical protein, at 783,205 to 783,807
_RS04120
Position (kb) 781
782
783 Strain fitness (log2 ratio) -2
-1
0
1
2 at 780.618 kb on + strand, within MMP_RS04110 at 780.637 kb on - strand, within MMP_RS04110 at 780.698 kb on + strand, within MMP_RS04110 at 780.731 kb on + strand, within MMP_RS04110 at 780.865 kb on - strand at 780.887 kb on + strand at 781.001 kb on - strand at 781.002 kb on + strand at 781.017 kb on - strand at 781.019 kb on - strand at 781.020 kb on + strand at 781.031 kb on - strand at 781.031 kb on - strand at 781.031 kb on - strand at 781.032 kb on + strand at 781.034 kb on - strand at 781.034 kb on - strand at 781.048 kb on - strand at 781.049 kb on + strand at 781.049 kb on + strand at 781.050 kb on - strand at 781.050 kb on - strand at 781.050 kb on - strand at 781.051 kb on + strand at 781.051 kb on + strand at 781.056 kb on - strand at 781.057 kb on + strand at 781.057 kb on + strand at 781.058 kb on - strand at 781.058 kb on - strand at 781.058 kb on - strand at 781.059 kb on + strand at 781.059 kb on + strand at 781.061 kb on + strand at 781.088 kb on - strand at 781.088 kb on - strand at 781.088 kb on - strand at 781.088 kb on - strand at 781.088 kb on - strand at 781.088 kb on - strand at 781.089 kb on + strand at 781.089 kb on + strand at 781.097 kb on - strand at 781.097 kb on - strand at 781.098 kb on + strand at 781.099 kb on - strand at 781.099 kb on - strand at 781.099 kb on - strand at 781.099 kb on - strand at 781.099 kb on - strand at 781.100 kb on + strand at 781.100 kb on + strand at 781.100 kb on + strand at 781.100 kb on + strand at 781.100 kb on + strand at 781.100 kb on + strand at 781.111 kb on + strand at 781.111 kb on + strand at 781.131 kb on - strand at 781.132 kb on + strand at 781.134 kb on + strand at 781.134 kb on + strand at 781.134 kb on + strand at 781.155 kb on + strand at 781.168 kb on - strand at 781.168 kb on - strand at 781.173 kb on + strand at 781.190 kb on - strand at 781.190 kb on - strand at 781.196 kb on - strand at 781.196 kb on - strand at 781.196 kb on - strand at 781.197 kb on + strand at 781.239 kb on + strand at 781.267 kb on - strand at 781.267 kb on - strand at 781.315 kb on - strand at 781.332 kb on + strand at 781.336 kb on + strand at 781.337 kb on - strand at 781.432 kb on + strand at 781.482 kb on - strand at 781.505 kb on - strand at 781.515 kb on - strand at 781.523 kb on + strand at 781.578 kb on + strand at 781.586 kb on + strand at 781.589 kb on + strand at 781.590 kb on - strand at 781.597 kb on - strand at 781.626 kb on - strand at 781.633 kb on - strand at 781.634 kb on + strand at 781.638 kb on + strand at 781.638 kb on + strand at 781.662 kb on - strand at 781.749 kb on + strand, within MMP_RS04115 at 781.768 kb on - strand, within MMP_RS04115 at 781.802 kb on - strand, within MMP_RS04115 at 781.802 kb on - strand, within MMP_RS04115 at 781.835 kb on - strand, within MMP_RS04115 at 781.835 kb on - strand, within MMP_RS04115 at 781.854 kb on - strand, within MMP_RS04115 at 781.855 kb on + strand, within MMP_RS04115 at 781.862 kb on - strand, within MMP_RS04115 at 781.868 kb on + strand, within MMP_RS04115 at 781.938 kb on + strand, within MMP_RS04115 at 781.998 kb on + strand, within MMP_RS04115 at 782.097 kb on - strand, within MMP_RS04115 at 782.314 kb on + strand, within MMP_RS04115 at 782.358 kb on + strand, within MMP_RS04115 at 782.361 kb on - strand, within MMP_RS04115 at 782.364 kb on - strand, within MMP_RS04115 at 782.365 kb on + strand, within MMP_RS04115 at 782.370 kb on + strand, within MMP_RS04115 at 782.390 kb on + strand, within MMP_RS04115 at 782.399 kb on - strand, within MMP_RS04115 at 782.400 kb on + strand, within MMP_RS04115 at 782.406 kb on - strand, within MMP_RS04115 at 782.427 kb on - strand, within MMP_RS04115 at 782.427 kb on - strand, within MMP_RS04115 at 782.428 kb on + strand, within MMP_RS04115 at 782.437 kb on + strand, within MMP_RS04115 at 782.536 kb on - strand, within MMP_RS04115 at 782.536 kb on - strand, within MMP_RS04115 at 782.605 kb on - strand, within MMP_RS04115 at 782.626 kb on + strand, within MMP_RS04115 at 782.637 kb on - strand, within MMP_RS04115 at 782.758 kb on + strand at 782.833 kb on + strand at 782.838 kb on + strand at 782.838 kb on + strand at 782.849 kb on + strand at 782.919 kb on - strand at 782.920 kb on + strand at 782.920 kb on + strand at 782.921 kb on - strand at 782.949 kb on + strand at 782.956 kb on + strand at 782.989 kb on + strand at 783.008 kb on + strand at 783.051 kb on - strand at 783.051 kb on - strand at 783.078 kb on + strand at 783.078 kb on + strand at 783.106 kb on + strand at 783.146 kb on - strand at 783.168 kb on + strand at 783.226 kb on + strand at 783.226 kb on + strand at 783.228 kb on + strand at 783.228 kb on + strand at 783.257 kb on - strand at 783.356 kb on - strand, within MMP_RS04120 at 783.418 kb on - strand, within MMP_RS04120 at 783.466 kb on - strand, within MMP_RS04120 at 783.512 kb on + strand, within MMP_RS04120 at 783.569 kb on + strand, within MMP_RS04120 at 783.667 kb on - strand, within MMP_RS04120 at 783.667 kb on - strand, within MMP_RS04120 at 783.668 kb on + strand, within MMP_RS04120 at 783.668 kb on + strand, within MMP_RS04120 at 783.668 kb on + strand, within MMP_RS04120 at 783.668 kb on + strand, within MMP_RS04120 at 783.671 kb on - strand, within MMP_RS04120 at 783.671 kb on - strand, within MMP_RS04120 at 783.678 kb on - strand, within MMP_RS04120 at 783.678 kb on - strand, within MMP_RS04120 at 783.679 kb on + strand, within MMP_RS04120 at 783.681 kb on - strand, within MMP_RS04120 at 783.687 kb on - strand, within MMP_RS04120 at 783.693 kb on + strand, within MMP_RS04120 at 783.717 kb on - strand, within MMP_RS04120 at 783.759 kb on - strand at 783.795 kb on - strand at 783.800 kb on - strand at 783.801 kb on + strand at 783.819 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with Neomycin 12.5 mM remove 780,618 + MMP_RS04110 0.83 -0.4 780,637 - MMP_RS04110 0.84 -0.0 780,698 + MMP_RS04110 0.87 -0.8 780,731 + MMP_RS04110 0.89 -0.6 780,865 - -0.5 780,887 + -0.6 781,001 - -0.3 781,002 + -0.3 781,017 - -0.2 781,019 - +0.1 781,020 + +0.4 781,031 - -0.7 781,031 - +0.0 781,031 - +0.3 781,032 + +0.0 781,034 - -0.0 781,034 - -0.3 781,048 - +0.2 781,049 + -0.3 781,049 + -0.1 781,050 - -0.3 781,050 - -0.4 781,050 - +0.2 781,051 + -0.4 781,051 + +0.8 781,056 - -0.7 781,057 + -0.1 781,057 + -0.7 781,058 - -0.1 781,058 - -0.3 781,058 - -0.5 781,059 + -0.1 781,059 + -0.0 781,061 + +0.2 781,088 - -0.0 781,088 - -0.3 781,088 - -0.5 781,088 - +0.6 781,088 - -0.5 781,088 - -0.2 781,089 + +0.5 781,089 + +0.3 781,097 - +0.2 781,097 - -0.4 781,098 + -0.0 781,099 - +0.1 781,099 - -0.4 781,099 - -0.7 781,099 - -0.2 781,099 - -0.2 781,100 + +0.3 781,100 + -0.6 781,100 + -0.6 781,100 + +0.6 781,100 + +0.0 781,100 + -0.3 781,111 + -1.4 781,111 + +0.2 781,131 - -0.7 781,132 + -0.3 781,134 + +0.3 781,134 + -1.4 781,134 + -1.4 781,155 + +0.3 781,168 - +0.1 781,168 - -0.3 781,173 + -0.3 781,190 - +0.5 781,190 - -0.6 781,196 - +0.2 781,196 - +0.2 781,196 - +0.2 781,197 + -0.6 781,239 + -0.1 781,267 - -0.1 781,267 - -0.3 781,315 - +0.0 781,332 + -0.0 781,336 + +0.4 781,337 - +0.0 781,432 + -0.5 781,482 - +0.3 781,505 - +0.2 781,515 - +0.6 781,523 + -0.1 781,578 + -0.5 781,586 + +0.4 781,589 + +0.2 781,590 - +0.3 781,597 - +0.2 781,626 - +0.0 781,633 - -0.9 781,634 + -0.2 781,638 + +0.4 781,638 + -0.3 781,662 - -0.6 781,749 + MMP_RS04115 0.12 -0.1 781,768 - MMP_RS04115 0.14 +0.3 781,802 - MMP_RS04115 0.17 -0.2 781,802 - MMP_RS04115 0.17 -0.3 781,835 - MMP_RS04115 0.19 -0.7 781,835 - MMP_RS04115 0.19 +0.2 781,854 - MMP_RS04115 0.21 -0.4 781,855 + MMP_RS04115 0.21 -0.0 781,862 - MMP_RS04115 0.22 -0.3 781,868 + MMP_RS04115 0.22 -0.5 781,938 + MMP_RS04115 0.28 -1.7 781,998 + MMP_RS04115 0.33 +0.3 782,097 - MMP_RS04115 0.41 -0.9 782,314 + MMP_RS04115 0.58 +0.6 782,358 + MMP_RS04115 0.62 -0.9 782,361 - MMP_RS04115 0.62 -0.1 782,364 - MMP_RS04115 0.62 +0.0 782,365 + MMP_RS04115 0.62 -0.1 782,370 + MMP_RS04115 0.63 -0.3 782,390 + MMP_RS04115 0.64 -0.1 782,399 - MMP_RS04115 0.65 +0.3 782,400 + MMP_RS04115 0.65 -0.7 782,406 - MMP_RS04115 0.66 -0.0 782,427 - MMP_RS04115 0.67 -0.4 782,427 - MMP_RS04115 0.67 +0.2 782,428 + MMP_RS04115 0.67 -0.4 782,437 + MMP_RS04115 0.68 -0.1 782,536 - MMP_RS04115 0.76 -0.0 782,536 - MMP_RS04115 0.76 +0.1 782,605 - MMP_RS04115 0.82 +0.0 782,626 + MMP_RS04115 0.83 -0.5 782,637 - MMP_RS04115 0.84 +0.1 782,758 + -0.6 782,833 + -0.1 782,838 + -0.2 782,838 + +0.1 782,849 + +1.1 782,919 - +0.0 782,920 + -0.5 782,920 + -0.7 782,921 - -0.9 782,949 + +0.1 782,956 + -1.0 782,989 + -0.1 783,008 + -0.3 783,051 - -0.5 783,051 - -0.3 783,078 + +0.1 783,078 + +0.3 783,106 + +0.3 783,146 - +0.3 783,168 + -0.7 783,226 + -1.9 783,226 + -0.2 783,228 + +0.3 783,228 + -0.3 783,257 - -0.2 783,356 - MMP_RS04120 0.25 -0.3 783,418 - MMP_RS04120 0.35 -0.4 783,466 - MMP_RS04120 0.43 -0.3 783,512 + MMP_RS04120 0.51 -0.0 783,569 + MMP_RS04120 0.60 +0.6 783,667 - MMP_RS04120 0.77 -0.2 783,667 - MMP_RS04120 0.77 -1.3 783,668 + MMP_RS04120 0.77 +0.1 783,668 + MMP_RS04120 0.77 -0.3 783,668 + MMP_RS04120 0.77 +2.2 783,668 + MMP_RS04120 0.77 -0.3 783,671 - MMP_RS04120 0.77 -1.0 783,671 - MMP_RS04120 0.77 +0.7 783,678 - MMP_RS04120 0.78 +0.0 783,678 - MMP_RS04120 0.78 +0.5 783,679 + MMP_RS04120 0.79 -0.1 783,681 - MMP_RS04120 0.79 +0.4 783,687 - MMP_RS04120 0.80 +0.0 783,693 + MMP_RS04120 0.81 -1.1 783,717 - MMP_RS04120 0.85 -0.2 783,759 - +0.3 783,795 - -0.3 783,800 - -0.1 783,801 + +0.2 783,819 + +0.6
Or see this region's nucleotide sequence