Experiment: Formate with Neomycin 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04035 and MMP_RS04040 are separated by 5 nucleotides MMP_RS04040 and MMP_RS04045 are separated by 11 nucleotides MMP_RS04045 and MMP_RS04050 are separated by 100 nucleotides MMP_RS04050 and MMP_RS04055 are separated by 15 nucleotides MMP_RS04055 and MMP_RS04060 are separated by 26 nucleotides
MMP_RS04035: MMP_RS04035 - hypothetical protein, at 765,796 to 766,236
_RS04035
MMP_RS04040: MMP_RS04040 - hypothetical protein, at 766,242 to 766,721
_RS04040
MMP_RS04045: MMP_RS04045 - hypothetical protein, at 766,733 to 767,473
_RS04045
MMP_RS04050: MMP_RS04050 - hypothetical protein, at 767,574 to 767,810
_RS04050
MMP_RS04055: MMP_RS04055 - hypothetical protein, at 767,826 to 768,143
_RS04055
MMP_RS04060: MMP_RS04060 - hypothetical protein, at 768,170 to 768,685
_RS04060
Position (kb) 766
767
768 Strain fitness (log2 ratio) -1
0
1 at 765.759 kb on + strand at 766.011 kb on + strand, within MMP_RS04035 at 766.082 kb on - strand, within MMP_RS04035 at 766.361 kb on - strand, within MMP_RS04040 at 766.361 kb on - strand, within MMP_RS04040 at 766.362 kb on + strand, within MMP_RS04040 at 766.362 kb on + strand, within MMP_RS04040 at 766.363 kb on - strand, within MMP_RS04040 at 766.364 kb on + strand, within MMP_RS04040 at 766.365 kb on - strand, within MMP_RS04040 at 766.375 kb on + strand, within MMP_RS04040 at 766.413 kb on - strand, within MMP_RS04040 at 766.424 kb on - strand, within MMP_RS04040 at 766.528 kb on - strand, within MMP_RS04040 at 766.528 kb on - strand, within MMP_RS04040 at 766.529 kb on + strand, within MMP_RS04040 at 766.532 kb on - strand, within MMP_RS04040 at 766.626 kb on + strand, within MMP_RS04040 at 766.629 kb on - strand, within MMP_RS04040 at 766.757 kb on + strand at 766.819 kb on + strand, within MMP_RS04045 at 766.897 kb on - strand, within MMP_RS04045 at 766.985 kb on - strand, within MMP_RS04045 at 767.046 kb on + strand, within MMP_RS04045 at 767.053 kb on - strand, within MMP_RS04045 at 767.053 kb on - strand, within MMP_RS04045 at 767.054 kb on + strand, within MMP_RS04045 at 767.145 kb on - strand, within MMP_RS04045 at 767.182 kb on - strand, within MMP_RS04045 at 767.186 kb on - strand, within MMP_RS04045 at 767.199 kb on + strand, within MMP_RS04045 at 767.252 kb on - strand, within MMP_RS04045 at 767.274 kb on + strand, within MMP_RS04045 at 767.303 kb on - strand, within MMP_RS04045 at 767.397 kb on - strand, within MMP_RS04045 at 767.397 kb on - strand, within MMP_RS04045 at 767.398 kb on + strand, within MMP_RS04045 at 767.576 kb on + strand at 767.581 kb on + strand at 767.621 kb on - strand, within MMP_RS04050 at 767.677 kb on - strand, within MMP_RS04050 at 767.712 kb on + strand, within MMP_RS04050 at 767.742 kb on - strand, within MMP_RS04050 at 767.787 kb on - strand at 767.924 kb on + strand, within MMP_RS04055 at 768.292 kb on + strand, within MMP_RS04060 at 768.317 kb on - strand, within MMP_RS04060 at 768.425 kb on - strand, within MMP_RS04060 at 768.426 kb on + strand, within MMP_RS04060
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with Neomycin 12.5 mM remove 765,759 + +0.0 766,011 + MMP_RS04035 0.49 -0.4 766,082 - MMP_RS04035 0.65 -0.0 766,361 - MMP_RS04040 0.25 -0.2 766,361 - MMP_RS04040 0.25 -0.5 766,362 + MMP_RS04040 0.25 -0.5 766,362 + MMP_RS04040 0.25 +0.8 766,363 - MMP_RS04040 0.25 -0.1 766,364 + MMP_RS04040 0.25 -0.2 766,365 - MMP_RS04040 0.26 +0.9 766,375 + MMP_RS04040 0.28 -0.3 766,413 - MMP_RS04040 0.36 +0.9 766,424 - MMP_RS04040 0.38 +0.0 766,528 - MMP_RS04040 0.60 -0.9 766,528 - MMP_RS04040 0.60 -1.3 766,529 + MMP_RS04040 0.60 +0.8 766,532 - MMP_RS04040 0.60 -0.3 766,626 + MMP_RS04040 0.80 +0.2 766,629 - MMP_RS04040 0.81 -0.1 766,757 + +0.3 766,819 + MMP_RS04045 0.12 +0.0 766,897 - MMP_RS04045 0.22 +0.7 766,985 - MMP_RS04045 0.34 -0.0 767,046 + MMP_RS04045 0.42 -1.1 767,053 - MMP_RS04045 0.43 -0.1 767,053 - MMP_RS04045 0.43 +0.1 767,054 + MMP_RS04045 0.43 +0.1 767,145 - MMP_RS04045 0.56 -0.5 767,182 - MMP_RS04045 0.61 -0.4 767,186 - MMP_RS04045 0.61 +0.5 767,199 + MMP_RS04045 0.63 -0.1 767,252 - MMP_RS04045 0.70 -0.9 767,274 + MMP_RS04045 0.73 +0.5 767,303 - MMP_RS04045 0.77 -0.5 767,397 - MMP_RS04045 0.90 -0.3 767,397 - MMP_RS04045 0.90 +0.1 767,398 + MMP_RS04045 0.90 -0.8 767,576 + -0.6 767,581 + -0.3 767,621 - MMP_RS04050 0.20 -0.6 767,677 - MMP_RS04050 0.43 +0.1 767,712 + MMP_RS04050 0.58 +0.4 767,742 - MMP_RS04050 0.71 +0.1 767,787 - -0.2 767,924 + MMP_RS04055 0.31 -0.1 768,292 + MMP_RS04060 0.24 -0.5 768,317 - MMP_RS04060 0.28 -0.4 768,425 - MMP_RS04060 0.49 +0.2 768,426 + MMP_RS04060 0.50 +0.2
Or see this region's nucleotide sequence