Experiment: Formate with Neomycin 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03985 and MMP_RS03990 are separated by 944 nucleotides MMP_RS03990 and MMP_RS03995 are separated by 163 nucleotides
MMP_RS03985: MMP_RS03985 - hypothetical protein, at 754,505 to 755,509
_RS03985
MMP_RS03990: MMP_RS03990 - recombinase family protein, at 756,454 to 757,008
_RS03990
MMP_RS03995: MMP_RS03995 - flippase-like domain-containing protein, at 757,172 to 758,122
_RS03995
Position (kb) 756
757
758 Strain fitness (log2 ratio) -1
0
1
2 at 755.454 kb on - strand at 755.498 kb on + strand at 755.512 kb on - strand at 755.643 kb on - strand at 755.645 kb on - strand at 755.645 kb on - strand at 755.646 kb on + strand at 755.648 kb on + strand at 755.648 kb on + strand at 755.648 kb on + strand at 755.665 kb on - strand at 755.708 kb on - strand at 755.708 kb on - strand at 755.709 kb on + strand at 755.709 kb on + strand at 755.709 kb on + strand at 755.709 kb on + strand at 755.710 kb on - strand at 755.711 kb on + strand at 755.794 kb on - strand at 755.836 kb on - strand at 755.836 kb on - strand at 755.836 kb on - strand at 755.837 kb on + strand at 755.837 kb on + strand at 755.859 kb on - strand at 755.860 kb on + strand at 755.892 kb on + strand at 755.937 kb on + strand at 755.937 kb on + strand at 755.955 kb on - strand at 755.956 kb on + strand at 755.989 kb on - strand at 755.990 kb on + strand at 755.991 kb on - strand at 755.995 kb on - strand at 755.996 kb on + strand at 755.998 kb on - strand at 755.998 kb on - strand at 756.074 kb on - strand at 756.093 kb on - strand at 756.093 kb on - strand at 756.109 kb on - strand at 756.118 kb on + strand at 756.143 kb on - strand at 756.147 kb on - strand at 756.148 kb on + strand at 756.203 kb on + strand at 756.209 kb on + strand at 756.267 kb on - strand at 756.305 kb on + strand at 756.339 kb on + strand at 756.371 kb on + strand at 756.391 kb on - strand at 756.392 kb on + strand at 756.455 kb on - strand at 756.455 kb on - strand at 756.456 kb on + strand at 756.473 kb on - strand at 756.477 kb on - strand at 756.653 kb on + strand, within MMP_RS03990 at 756.768 kb on - strand, within MMP_RS03990 at 756.835 kb on + strand, within MMP_RS03990 at 756.837 kb on - strand, within MMP_RS03990 at 756.840 kb on - strand, within MMP_RS03990 at 756.853 kb on - strand, within MMP_RS03990 at 756.894 kb on - strand, within MMP_RS03990 at 756.894 kb on - strand, within MMP_RS03990 at 756.895 kb on + strand, within MMP_RS03990 at 756.895 kb on + strand, within MMP_RS03990 at 756.942 kb on - strand, within MMP_RS03990 at 756.981 kb on - strand at 756.982 kb on + strand at 756.982 kb on + strand at 757.008 kb on - strand at 757.008 kb on - strand at 757.009 kb on + strand at 757.057 kb on - strand at 757.081 kb on - strand at 757.081 kb on - strand at 757.082 kb on + strand at 757.166 kb on + strand at 757.166 kb on + strand at 757.226 kb on + strand at 757.374 kb on + strand, within MMP_RS03995 at 757.374 kb on + strand, within MMP_RS03995 at 757.399 kb on - strand, within MMP_RS03995 at 757.434 kb on - strand, within MMP_RS03995 at 757.434 kb on - strand, within MMP_RS03995 at 757.434 kb on - strand, within MMP_RS03995 at 757.435 kb on + strand, within MMP_RS03995 at 757.435 kb on + strand, within MMP_RS03995 at 757.435 kb on + strand, within MMP_RS03995 at 757.441 kb on - strand, within MMP_RS03995 at 757.555 kb on - strand, within MMP_RS03995 at 757.616 kb on - strand, within MMP_RS03995 at 757.671 kb on + strand, within MMP_RS03995 at 757.672 kb on - strand, within MMP_RS03995 at 757.673 kb on + strand, within MMP_RS03995 at 757.727 kb on - strand, within MMP_RS03995 at 757.797 kb on + strand, within MMP_RS03995 at 758.006 kb on + strand, within MMP_RS03995
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with Neomycin 12.5 mM remove 755,454 - +0.2 755,498 + -0.1 755,512 - -0.6 755,643 - -0.1 755,645 - +0.2 755,645 - +0.2 755,646 + +0.4 755,648 + +0.0 755,648 + +0.6 755,648 + +0.4 755,665 - -0.4 755,708 - +1.7 755,708 - +2.0 755,709 + +0.3 755,709 + -0.1 755,709 + +0.8 755,709 + +1.3 755,710 - +1.5 755,711 + +0.4 755,794 - +0.5 755,836 - +0.0 755,836 - +0.7 755,836 - +0.3 755,837 + +0.6 755,837 + +0.1 755,859 - -0.3 755,860 + -1.2 755,892 + -0.1 755,937 + +0.3 755,937 + +0.0 755,955 - -0.1 755,956 + +0.5 755,989 - +0.1 755,990 + -0.6 755,991 - +0.3 755,995 - -0.2 755,996 + -0.2 755,998 - -0.2 755,998 - +0.2 756,074 - +0.2 756,093 - -0.2 756,093 - -0.3 756,109 - -0.6 756,118 + -0.0 756,143 - +0.6 756,147 - -0.1 756,148 + +0.3 756,203 + +0.6 756,209 + -0.1 756,267 - +0.2 756,305 + +0.4 756,339 + +0.4 756,371 + -0.5 756,391 - -0.1 756,392 + -0.4 756,455 - +0.6 756,455 - -0.3 756,456 + -0.1 756,473 - +0.4 756,477 - -0.5 756,653 + MMP_RS03990 0.36 -0.1 756,768 - MMP_RS03990 0.57 -0.3 756,835 + MMP_RS03990 0.69 -0.2 756,837 - MMP_RS03990 0.69 -0.5 756,840 - MMP_RS03990 0.70 -0.3 756,853 - MMP_RS03990 0.72 +0.4 756,894 - MMP_RS03990 0.79 +0.2 756,894 - MMP_RS03990 0.79 +0.3 756,895 + MMP_RS03990 0.79 -0.7 756,895 + MMP_RS03990 0.79 -0.1 756,942 - MMP_RS03990 0.88 -0.4 756,981 - +0.3 756,982 + +0.1 756,982 + +0.2 757,008 - -0.1 757,008 - -0.4 757,009 + +0.1 757,057 - +0.4 757,081 - -0.9 757,081 - -0.3 757,082 + +0.4 757,166 + -1.0 757,166 + -0.1 757,226 + -0.3 757,374 + MMP_RS03995 0.21 -0.6 757,374 + MMP_RS03995 0.21 -0.3 757,399 - MMP_RS03995 0.24 +0.3 757,434 - MMP_RS03995 0.28 +0.4 757,434 - MMP_RS03995 0.28 +0.0 757,434 - MMP_RS03995 0.28 +0.1 757,435 + MMP_RS03995 0.28 -0.5 757,435 + MMP_RS03995 0.28 -0.3 757,435 + MMP_RS03995 0.28 +0.5 757,441 - MMP_RS03995 0.28 +0.4 757,555 - MMP_RS03995 0.40 +0.4 757,616 - MMP_RS03995 0.47 -0.4 757,671 + MMP_RS03995 0.52 -0.6 757,672 - MMP_RS03995 0.53 +0.2 757,673 + MMP_RS03995 0.53 -0.6 757,727 - MMP_RS03995 0.58 +0.6 757,797 + MMP_RS03995 0.66 -0.1 758,006 + MMP_RS03995 0.88 -0.2
Or see this region's nucleotide sequence