Experiment: Formate with Neomycin 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03815 and MMP_RS03820 are separated by 125 nucleotides MMP_RS03820 and MMP_RS03825 are separated by 9 nucleotides MMP_RS03825 and MMP_RS03830 are separated by 22 nucleotides MMP_RS03830 and MMP_RS03835 are separated by 106 nucleotides
MMP_RS03815: MMP_RS03815 - excinuclease ABC subunit UvrA, at 721,032 to 723,887
_RS03815
MMP_RS03820: MMP_RS03820 - EamA family transporter, at 724,013 to 724,432
_RS03820
MMP_RS03825: MMP_RS03825 - exodeoxyribonuclease VII small subunit, at 724,442 to 724,645
_RS03825
MMP_RS03830: MMP_RS03830 - exodeoxyribonuclease VII large subunit, at 724,668 to 725,891
_RS03830
MMP_RS03835: MMP_RS03835 - MATE family efflux transporter, at 725,998 to 727,350
_RS03835
Position (kb) 724
725
726 Strain fitness (log2 ratio) -1
0
1
2 at 723.680 kb on - strand at 723.710 kb on + strand at 723.730 kb on - strand at 723.730 kb on - strand at 723.815 kb on - strand at 723.870 kb on - strand at 723.870 kb on - strand at 723.891 kb on - strand at 723.903 kb on - strand at 723.921 kb on - strand at 723.922 kb on + strand at 723.930 kb on + strand at 723.935 kb on - strand at 723.946 kb on + strand at 723.985 kb on - strand at 724.014 kb on - strand at 724.094 kb on - strand, within MMP_RS03820 at 724.110 kb on + strand, within MMP_RS03820 at 724.223 kb on - strand, within MMP_RS03820 at 724.228 kb on + strand, within MMP_RS03820 at 724.262 kb on - strand, within MMP_RS03820 at 724.263 kb on + strand, within MMP_RS03820 at 724.280 kb on - strand, within MMP_RS03820 at 724.288 kb on - strand, within MMP_RS03820 at 724.289 kb on + strand, within MMP_RS03820 at 724.289 kb on + strand, within MMP_RS03820 at 724.323 kb on - strand, within MMP_RS03820 at 724.333 kb on - strand, within MMP_RS03820 at 724.334 kb on + strand, within MMP_RS03820 at 724.392 kb on + strand at 724.682 kb on - strand at 724.686 kb on + strand at 724.686 kb on + strand at 724.686 kb on + strand at 724.715 kb on - strand at 724.758 kb on - strand at 724.759 kb on + strand at 724.806 kb on - strand, within MMP_RS03830 at 724.820 kb on - strand, within MMP_RS03830 at 725.072 kb on + strand, within MMP_RS03830 at 725.080 kb on - strand, within MMP_RS03830 at 725.081 kb on + strand, within MMP_RS03830 at 725.081 kb on + strand, within MMP_RS03830 at 725.081 kb on + strand, within MMP_RS03830 at 725.083 kb on + strand, within MMP_RS03830 at 725.122 kb on + strand, within MMP_RS03830 at 725.545 kb on + strand, within MMP_RS03830 at 725.576 kb on - strand, within MMP_RS03830 at 725.635 kb on + strand, within MMP_RS03830 at 725.938 kb on - strand at 725.952 kb on - strand at 725.952 kb on - strand at 725.954 kb on - strand at 726.018 kb on + strand at 726.051 kb on + strand at 726.057 kb on - strand at 726.060 kb on - strand at 726.064 kb on + strand at 726.101 kb on + strand at 726.119 kb on - strand at 726.122 kb on + strand at 726.135 kb on - strand, within MMP_RS03835 at 726.136 kb on + strand, within MMP_RS03835 at 726.376 kb on - strand, within MMP_RS03835 at 726.446 kb on - strand, within MMP_RS03835 at 726.485 kb on - strand, within MMP_RS03835 at 726.494 kb on - strand, within MMP_RS03835 at 726.513 kb on + strand, within MMP_RS03835 at 726.719 kb on + strand, within MMP_RS03835 at 726.725 kb on + strand, within MMP_RS03835
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with Neomycin 12.5 mM remove 723,680 - +0.0 723,710 + +0.6 723,730 - +0.2 723,730 - +0.2 723,815 - -0.3 723,870 - +0.3 723,870 - -0.2 723,891 - -0.0 723,903 - -0.0 723,921 - -0.1 723,922 + +0.3 723,930 + +0.4 723,935 - +0.0 723,946 + +0.3 723,985 - +0.3 724,014 - +0.3 724,094 - MMP_RS03820 0.19 +0.3 724,110 + MMP_RS03820 0.23 +0.3 724,223 - MMP_RS03820 0.50 +0.3 724,228 + MMP_RS03820 0.51 -0.5 724,262 - MMP_RS03820 0.59 +0.1 724,263 + MMP_RS03820 0.60 +0.1 724,280 - MMP_RS03820 0.64 -0.1 724,288 - MMP_RS03820 0.65 +1.3 724,289 + MMP_RS03820 0.66 +0.2 724,289 + MMP_RS03820 0.66 +2.1 724,323 - MMP_RS03820 0.74 +0.6 724,333 - MMP_RS03820 0.76 +0.4 724,334 + MMP_RS03820 0.76 +0.3 724,392 + -0.3 724,682 - +0.4 724,686 + +0.6 724,686 + +0.4 724,686 + +0.0 724,715 - -0.2 724,758 - -0.4 724,759 + -0.2 724,806 - MMP_RS03830 0.11 -0.4 724,820 - MMP_RS03830 0.12 -0.9 725,072 + MMP_RS03830 0.33 -0.0 725,080 - MMP_RS03830 0.34 +0.1 725,081 + MMP_RS03830 0.34 -0.3 725,081 + MMP_RS03830 0.34 -0.8 725,081 + MMP_RS03830 0.34 +0.1 725,083 + MMP_RS03830 0.34 +0.3 725,122 + MMP_RS03830 0.37 -0.2 725,545 + MMP_RS03830 0.72 +0.2 725,576 - MMP_RS03830 0.74 -0.5 725,635 + MMP_RS03830 0.79 -0.0 725,938 - +0.7 725,952 - -0.4 725,952 - +0.2 725,954 - +0.5 726,018 + -0.0 726,051 + -0.0 726,057 - +0.3 726,060 - +0.4 726,064 + +0.2 726,101 + +0.8 726,119 - -0.5 726,122 + -1.6 726,135 - MMP_RS03835 0.10 +0.3 726,136 + MMP_RS03835 0.10 +0.2 726,376 - MMP_RS03835 0.28 +0.2 726,446 - MMP_RS03835 0.33 +0.1 726,485 - MMP_RS03835 0.36 +2.6 726,494 - MMP_RS03835 0.37 -0.1 726,513 + MMP_RS03835 0.38 +0.2 726,719 + MMP_RS03835 0.53 +0.1 726,725 + MMP_RS03835 0.54 +0.2
Or see this region's nucleotide sequence