Experiment: Formate with Neomycin 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00840 and MMP_RS00845 are separated by 310 nucleotides MMP_RS00845 and MMP_RS00850 are separated by 33 nucleotides
MMP_RS00840: MMP_RS00840 - nitrogenase iron protein, at 156,832 to 157,710
_RS00840
MMP_RS00845: MMP_RS00845 - acetate--CoA ligase, at 158,021 to 159,931
_RS00845
MMP_RS00850: MMP_RS00850 - TIGR01177 family methyltransferase, at 159,965 to 161,017
_RS00850
Position (kb) 158
159
160 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 157.191 kb on - strand at 157.766 kb on - strand at 157.767 kb on + strand at 157.770 kb on + strand at 157.770 kb on + strand at 157.774 kb on + strand at 157.775 kb on - strand at 157.789 kb on + strand at 157.789 kb on + strand at 157.789 kb on + strand at 157.789 kb on + strand at 157.791 kb on - strand at 157.807 kb on - strand at 157.812 kb on - strand at 157.813 kb on + strand at 157.851 kb on - strand at 158.040 kb on + strand at 158.387 kb on - strand, within MMP_RS00845 at 158.387 kb on - strand, within MMP_RS00845 at 158.520 kb on - strand, within MMP_RS00845 at 158.624 kb on - strand, within MMP_RS00845 at 158.655 kb on - strand, within MMP_RS00845 at 158.916 kb on - strand, within MMP_RS00845 at 158.919 kb on - strand, within MMP_RS00845 at 158.922 kb on + strand, within MMP_RS00845 at 158.922 kb on + strand, within MMP_RS00845 at 159.061 kb on - strand, within MMP_RS00845 at 159.099 kb on - strand, within MMP_RS00845 at 159.165 kb on + strand, within MMP_RS00845 at 159.172 kb on + strand, within MMP_RS00845 at 159.232 kb on - strand, within MMP_RS00845 at 159.233 kb on + strand, within MMP_RS00845 at 159.235 kb on - strand, within MMP_RS00845 at 159.235 kb on - strand, within MMP_RS00845 at 159.237 kb on - strand, within MMP_RS00845 at 159.237 kb on - strand, within MMP_RS00845 at 159.237 kb on - strand, within MMP_RS00845 at 159.237 kb on - strand, within MMP_RS00845 at 159.238 kb on + strand, within MMP_RS00845 at 159.238 kb on + strand, within MMP_RS00845 at 159.669 kb on - strand, within MMP_RS00845 at 159.929 kb on - strand at 159.988 kb on - strand at 159.988 kb on - strand at 159.988 kb on - strand at 159.989 kb on + strand at 159.998 kb on + strand at 160.077 kb on + strand, within MMP_RS00850 at 160.119 kb on + strand, within MMP_RS00850 at 160.185 kb on + strand, within MMP_RS00850 at 160.344 kb on + strand, within MMP_RS00850 at 160.481 kb on - strand, within MMP_RS00850 at 160.542 kb on - strand, within MMP_RS00850 at 160.787 kb on - strand, within MMP_RS00850
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with Neomycin 12.5 mM remove 157,191 - +0.3 157,766 - -2.0 157,767 + +0.0 157,770 + -0.2 157,770 + -0.4 157,774 + -0.8 157,775 - -0.5 157,789 + -0.6 157,789 + +0.5 157,789 + +0.1 157,789 + +0.1 157,791 - -0.0 157,807 - +1.4 157,812 - +0.2 157,813 + +0.0 157,851 - -0.5 158,040 + -0.1 158,387 - MMP_RS00845 0.19 +0.9 158,387 - MMP_RS00845 0.19 +0.8 158,520 - MMP_RS00845 0.26 +1.4 158,624 - MMP_RS00845 0.32 +0.4 158,655 - MMP_RS00845 0.33 +1.5 158,916 - MMP_RS00845 0.47 +2.0 158,919 - MMP_RS00845 0.47 +1.9 158,922 + MMP_RS00845 0.47 -0.5 158,922 + MMP_RS00845 0.47 +0.4 159,061 - MMP_RS00845 0.54 +1.3 159,099 - MMP_RS00845 0.56 +1.7 159,165 + MMP_RS00845 0.60 -0.6 159,172 + MMP_RS00845 0.60 -0.3 159,232 - MMP_RS00845 0.63 +2.8 159,233 + MMP_RS00845 0.63 +1.0 159,235 - MMP_RS00845 0.64 +2.5 159,235 - MMP_RS00845 0.64 +2.2 159,237 - MMP_RS00845 0.64 +2.5 159,237 - MMP_RS00845 0.64 +1.5 159,237 - MMP_RS00845 0.64 +2.9 159,237 - MMP_RS00845 0.64 +2.9 159,238 + MMP_RS00845 0.64 -0.4 159,238 + MMP_RS00845 0.64 -0.2 159,669 - MMP_RS00845 0.86 +2.6 159,929 - +1.4 159,988 - +1.6 159,988 - +0.8 159,988 - +0.8 159,989 + -0.3 159,998 + -0.1 160,077 + MMP_RS00850 0.11 +0.2 160,119 + MMP_RS00850 0.15 -0.1 160,185 + MMP_RS00850 0.21 +0.5 160,344 + MMP_RS00850 0.36 +0.1 160,481 - MMP_RS00850 0.49 +1.8 160,542 - MMP_RS00850 0.55 -0.3 160,787 - MMP_RS00850 0.78 +0.2
Or see this region's nucleotide sequence