Strain Fitness in Pantoea sp. MT58 around IAI47_19545

Experiment: Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
136,818	+				-1.2
136,819	-				-1.4
136,819	-				-1.4
136,833	+				+0.9
136,833	+				-0.7
136,833	+				-1.5
136,834	-				-0.3
136,835	+				+1.8
136,835	+				+2.3
136,835	+				+0.3
136,835	+				+5.3
136,836	-				+2.4
136,836	-				+0.3
136,836	-				+2.3
136,847	-				+1.9
136,847	-				-0.6
136,847	-				-1.7
136,849	-				-1.4
136,849	-				+0.9
136,879	-				-0.4
136,885	-				-0.7
136,937	+		IAI47_19540	0.10	-2.7
136,947	+		IAI47_19540	0.12	+1.3
136,947	+		IAI47_19540	0.12	-1.0
136,949	+		IAI47_19540	0.12	+3.8
136,950	-		IAI47_19540	0.12	-0.2
136,950	-		IAI47_19540	0.12	+0.0
136,953	+		IAI47_19540	0.12	-2.2
136,953	+		IAI47_19540	0.12	-0.5
136,953	+		IAI47_19540	0.12	+1.3
136,953	+		IAI47_19540	0.12	-1.1
136,953	+		IAI47_19540	0.12	-0.2
136,954	-		IAI47_19540	0.13	-0.7
136,954	-		IAI47_19540	0.13	-1.2
136,954	-		IAI47_19540	0.13	+1.8
136,954	-		IAI47_19540	0.13	-2.5
137,089	-		IAI47_19540	0.31	-1.1
137,106	+		IAI47_19540	0.33	+1.0
137,106	+		IAI47_19540	0.33	+1.3
137,112	+		IAI47_19540	0.34	+0.0
137,112	+		IAI47_19540	0.34	+0.3
137,112	+		IAI47_19540	0.34	-1.9
137,112	+		IAI47_19540	0.34	+2.3
137,112	+		IAI47_19540	0.34	-0.7
137,113	-		IAI47_19540	0.34	+0.3
137,113	-		IAI47_19540	0.34	+0.5
137,113	-		IAI47_19540	0.34	+3.6
137,113	-		IAI47_19540	0.34	+3.1
137,113	-		IAI47_19540	0.34	+4.2
137,113	-		IAI47_19540	0.34	-1.4
137,166	+		IAI47_19540	0.41	-0.5
137,166	+		IAI47_19540	0.41	-1.6
137,167	-		IAI47_19540	0.41	-1.2
137,167	-		IAI47_19540	0.41	+0.8
137,176	-		IAI47_19540	0.43	-1.5
137,343	-		IAI47_19540	0.65	-1.8
137,343	-		IAI47_19540	0.65	+2.3
137,416	+		IAI47_19540	0.75	-0.7
137,416	+		IAI47_19540	0.75	+3.0
137,452	+		IAI47_19540	0.80	-1.5
137,452	+		IAI47_19540	0.80	-1.4
137,452	+		IAI47_19540	0.80	-1.7
137,452	+		IAI47_19540	0.80	+1.3
137,453	-		IAI47_19540	0.80	-1.1
137,453	-		IAI47_19540	0.80	-0.2
137,453	-		IAI47_19540	0.80	+0.9
137,453	-		IAI47_19540	0.80	-0.7
137,453	-		IAI47_19540	0.80	-1.6
137,454	+		IAI47_19540	0.80	-0.8
137,454	+		IAI47_19540	0.80	+0.1
137,454	+		IAI47_19540	0.80	+0.3
137,454	+		IAI47_19540	0.80	+1.7
137,455	-		IAI47_19540	0.80	-2.3
137,455	-		IAI47_19540	0.80	-1.2
137,455	-		IAI47_19540	0.80	-1.8
137,455	-		IAI47_19540	0.80	+2.0
137,455	-		IAI47_19540	0.80	+3.0
137,533	+				-1.7
137,533	+				-1.5
137,534	-				-0.5
137,545	+				+3.0
137,545	+				-0.5
137,558	+				-1.0
137,559	-				-1.5
137,559	-				-1.6
137,595	+				-0.7
137,595	+				+3.5
137,595	+				-2.1
137,596	-				-0.6
137,599	+				+1.7
137,599	+				-1.4
137,599	+				+0.2
137,599	+				+0.0
137,599	+				+1.9
137,599	+				+2.5
137,603	+				-1.2
137,604	-				+0.8
137,669	+				-0.5
137,672	+				-1.2
137,672	+				-0.8
137,672	+				-0.1
137,673	-				-2.5
137,673	-				+2.3
137,674	+				-0.7
137,699	+				-1.8
137,700	-				+2.7
137,700	-				-3.3
137,700	-				-1.9
137,706	+				+2.3
137,706	+				+0.0
137,706	+				-1.7
137,706	+				-1.1
137,707	-				-1.2
137,739	+				-0.8
137,740	-				-1.0
137,746	+				+0.3
137,762	+				+1.9
137,762	+				+2.6
137,762	+				-0.6
137,762	+				-1.6
137,763	-				+1.3
137,763	-				+1.4
137,763	-				+2.3
137,763	-				+3.3
137,763	-				+0.0
137,763	-				-3.1
137,784	-				-0.7
137,796	+				+3.5
137,796	+				-0.8
137,850	+				+1.1
137,922	+		IAI47_19545	0.13	+0.0
137,923	-		IAI47_19545	0.13	+1.7
137,923	-		IAI47_19545	0.13	+0.3
137,923	-		IAI47_19545	0.13	-1.3
137,923	-		IAI47_19545	0.13	+0.9
138,029	+		IAI47_19545	0.22	-0.7
138,076	+		IAI47_19545	0.26	+2.0
138,077	-		IAI47_19545	0.26	-0.5
138,116	-		IAI47_19545	0.29	-0.3
138,116	-		IAI47_19545	0.29	+2.3
138,145	+		IAI47_19545	0.32	-2.0
138,145	+		IAI47_19545	0.32	-1.2
138,145	+		IAI47_19545	0.32	+0.1
138,175	+		IAI47_19545	0.34	-2.1
138,175	+		IAI47_19545	0.34	+0.0
138,176	-		IAI47_19545	0.34	-0.8
138,176	-		IAI47_19545	0.34	+4.5
138,188	-		IAI47_19545	0.35	-1.4
138,190	+		IAI47_19545	0.35	-2.3
138,191	-		IAI47_19545	0.35	+2.1
138,191	-		IAI47_19545	0.35	+0.2
138,191	-		IAI47_19545	0.35	-2.1
138,204	+		IAI47_19545	0.36	+0.3
138,205	-		IAI47_19545	0.37	+1.3
138,251	-		IAI47_19545	0.40	-3.3
138,375	+		IAI47_19545	0.51	+2.3
138,375	+		IAI47_19545	0.51	-0.3
138,376	-		IAI47_19545	0.51	+0.7
138,387	+		IAI47_19545	0.52	-1.1
138,387	+		IAI47_19545	0.52	+1.6
138,387	+		IAI47_19545	0.52	+2.0
138,387	+		IAI47_19545	0.52	+0.5
138,388	-		IAI47_19545	0.52	+3.7
138,388	-		IAI47_19545	0.52	+2.8
138,388	-		IAI47_19545	0.52	+1.7
138,391	+		IAI47_19545	0.52	+2.1
138,391	+		IAI47_19545	0.52	+0.6
138,392	-		IAI47_19545	0.52	+0.2
138,408	+		IAI47_19545	0.53	+2.5
138,408	+		IAI47_19545	0.53	+0.2
138,408	+		IAI47_19545	0.53	+2.3
138,408	+		IAI47_19545	0.53	-1.4
138,423	+		IAI47_19545	0.55	+2.9
138,505	-		IAI47_19545	0.62	+1.2
138,518	+		IAI47_19545	0.63	+0.4
138,519	-		IAI47_19545	0.63	-0.5
138,519	-		IAI47_19545	0.63	-0.6
138,552	+		IAI47_19545	0.65	+4.0
138,552	+		IAI47_19545	0.65	-1.4
138,553	-		IAI47_19545	0.66	+2.3
138,602	+		IAI47_19545	0.70	+0.2
138,616	+		IAI47_19545	0.71	-2.3
138,616	+		IAI47_19545	0.71	-0.5
138,617	-		IAI47_19545	0.71	+0.5
138,746	+		IAI47_19545	0.82	+2.5
138,746	+		IAI47_19545	0.82	-1.9
138,747	-		IAI47_19545	0.82	+1.3
138,754	+		IAI47_19545	0.82	+0.7
138,754	+		IAI47_19545	0.82	-1.8
138,755	-		IAI47_19545	0.82	-0.5
138,755	-		IAI47_19545	0.82	-0.7
138,755	-		IAI47_19545	0.82	+2.4
138,755	-		IAI47_19545	0.82	+4.4
138,755	-		IAI47_19545	0.82	+1.3
138,755	-		IAI47_19545	0.82	-0.8
138,755	-		IAI47_19545	0.82	+2.8
138,802	+		IAI47_19545	0.86	-1.0
138,802	+		IAI47_19545	0.86	+2.3
138,802	+		IAI47_19545	0.86	-0.8
138,803	-		IAI47_19545	0.86	-2.1
138,803	-		IAI47_19545	0.86	-0.8
138,803	-		IAI47_19545	0.86	+0.3
138,819	+		IAI47_19545	0.88	+1.3
138,819	+		IAI47_19545	0.88	+1.3
138,819	+		IAI47_19545	0.88	+1.8
138,819	+		IAI47_19545	0.88	+1.3
138,819	+		IAI47_19545	0.88	-1.1
138,820	-		IAI47_19545	0.88	-0.8
138,820	-		IAI47_19545	0.88	+5.7
138,867	-				-0.7
138,867	-				-1.6
138,873	-				+1.3
138,873	-				+2.7
138,874	+				+1.7
138,874	+				-0.7
138,875	-				+0.7
138,892	-				+0.0
138,924	+				-0.5
139,031	+				+6.2
139,032	+				+0.7
139,037	-				+2.2
139,037	-				+0.7
139,039	-				+2.9
139,066	+		IAI47_19550	0.16	+3.8
139,129	+		IAI47_19550	0.45	+0.7
139,129	+		IAI47_19550	0.45	-1.4
139,222	+		IAI47_19550	0.88	+0.0
139,235	+				-0.8
139,235	+				-0.7
139,252	+				+0.0
139,252	+				+1.3
139,253	-				-0.3
139,253	-				-1.7
139,404	+				+1.3
139,404	+				+3.7
139,405	-				-0.5
139,448	+		IAI47_19555	0.10	+1.9
139,448	+		IAI47_19555	0.10	+0.8
139,448	+		IAI47_19555	0.10	-2.1
139,448	+		IAI47_19555	0.10	-2.8
139,449	-		IAI47_19555	0.10	+0.3
139,449	-		IAI47_19555	0.10	+3.1
139,449	-		IAI47_19555	0.10	-0.8
139,449	-		IAI47_19555	0.10	+0.0
139,562	-		IAI47_19555	0.22	+0.6
139,562	-		IAI47_19555	0.22	-1.0
139,562	-		IAI47_19555	0.22	+4.3
139,612	-		IAI47_19555	0.28	+0.0
139,654	+		IAI47_19555	0.32	-1.4
139,654	+		IAI47_19555	0.32	+2.5
139,655	-		IAI47_19555	0.33	+1.7
139,670	+		IAI47_19555	0.34	+4.1
139,670	+		IAI47_19555	0.34	+0.5
139,670	+		IAI47_19555	0.34	-2.3
139,670	+		IAI47_19555	0.34	-1.1
139,670	+		IAI47_19555	0.34	+0.7
139,671	-		IAI47_19555	0.34	-0.3
139,671	-		IAI47_19555	0.34	-0.5
139,671	-		IAI47_19555	0.34	+1.9
139,671	-		IAI47_19555	0.34	-1.0
139,671	-		IAI47_19555	0.34	+2.7
139,671	-		IAI47_19555	0.34	+1.8
139,671	-		IAI47_19555	0.34	-0.3
139,671	-		IAI47_19555	0.34	+0.7
139,671	-		IAI47_19555	0.34	-0.3
139,700	+		IAI47_19555	0.37	-1.3
139,700	+		IAI47_19555	0.37	-1.8
139,701	-		IAI47_19555	0.38	-1.7
139,711	+		IAI47_19555	0.39	-0.3
139,711	+		IAI47_19555	0.39	+0.3
139,711	+		IAI47_19555	0.39	-1.8
139,712	-		IAI47_19555	0.39	-1.0
139,731	-		IAI47_19555	0.41	-1.7
139,731	-		IAI47_19555	0.41	+2.7
139,758	+		IAI47_19555	0.44	-1.1
139,759	-		IAI47_19555	0.44	+1.2
139,759	-		IAI47_19555	0.44	+2.3
139,761	+		IAI47_19555	0.44	+2.9
139,762	-		IAI47_19555	0.44	-0.7
139,762	-		IAI47_19555	0.44	-2.0
139,762	-		IAI47_19555	0.44	-1.3
139,762	-		IAI47_19555	0.44	-0.5
139,762	-		IAI47_19555	0.44	+1.6
139,838	+		IAI47_19555	0.53	+0.0
139,838	+		IAI47_19555	0.53	-3.9
139,838	+		IAI47_19555	0.53	+0.6
139,857	+		IAI47_19555	0.55	-0.5
139,910	+		IAI47_19555	0.60	+3.1
139,910	+		IAI47_19555	0.60	+2.8
139,910	+		IAI47_19555	0.60	-0.8
139,910	+		IAI47_19555	0.60	+0.9
139,910	+		IAI47_19555	0.60	+0.7
139,911	-		IAI47_19555	0.60	+4.1
139,911	-		IAI47_19555	0.60	-1.7
139,966	+		IAI47_19555	0.66	+3.2
139,966	+		IAI47_19555	0.66	+2.6
139,966	+		IAI47_19555	0.66	-1.5
139,966	+		IAI47_19555	0.66	-0.3
139,966	+		IAI47_19555	0.66	-2.6
139,966	+		IAI47_19555	0.66	-1.4
139,967	-		IAI47_19555	0.67	-1.1
139,967	-		IAI47_19555	0.67	+6.1
139,967	-		IAI47_19555	0.67	-0.1
139,967	-		IAI47_19555	0.67	+2.7
139,967	-		IAI47_19555	0.67	-1.9
139,967	-		IAI47_19555	0.67	-0.5