Strain Fitness in Pantoea sp. MT58 around IAI47_18230

Experiment: Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,877,786	-		IAI47_18225	0.39	-2.4
3,877,786	-		IAI47_18225	0.39	+0.0
3,877,809	+		IAI47_18225	0.41	+3.2
3,877,809	+		IAI47_18225	0.41	+0.3
3,877,809	+		IAI47_18225	0.41	-2.2
3,877,809	+		IAI47_18225	0.41	-0.9
3,877,810	-		IAI47_18225	0.41	-2.3
3,877,810	-		IAI47_18225	0.41	-0.9
3,877,810	-		IAI47_18225	0.41	+0.4
3,877,834	-		IAI47_18225	0.43	+2.3
3,877,842	+		IAI47_18225	0.44	+0.6
3,877,842	+		IAI47_18225	0.44	-3.1
3,877,842	+		IAI47_18225	0.44	-2.0
3,877,843	-		IAI47_18225	0.44	-2.7
3,877,908	+		IAI47_18225	0.48	+0.9
3,877,908	+		IAI47_18225	0.48	+0.6
3,877,908	+		IAI47_18225	0.48	+3.2
3,877,908	+		IAI47_18225	0.48	+0.7
3,877,908	+		IAI47_18225	0.48	+1.2
3,877,909	-		IAI47_18225	0.49	+0.3
3,877,909	-		IAI47_18225	0.49	-0.3
3,877,909	-		IAI47_18225	0.49	+1.6
3,877,945	+		IAI47_18225	0.51	+2.0
3,877,945	+		IAI47_18225	0.51	-0.9
3,877,945	+		IAI47_18225	0.51	+1.4
3,877,945	+		IAI47_18225	0.51	-0.2
3,877,945	+		IAI47_18225	0.51	+1.0
3,877,945	+		IAI47_18225	0.51	-0.7
3,877,945	+		IAI47_18225	0.51	-1.2
3,877,946	-		IAI47_18225	0.51	+4.7
3,877,992	+		IAI47_18225	0.55	-2.2
3,877,992	+		IAI47_18225	0.55	+4.7
3,877,992	+		IAI47_18225	0.55	+3.4
3,877,992	+		IAI47_18225	0.55	-2.3
3,877,992	+		IAI47_18225	0.55	-1.0
3,877,993	-		IAI47_18225	0.55	-1.3
3,877,993	-		IAI47_18225	0.55	+1.0
3,877,993	-		IAI47_18225	0.55	+4.1
3,877,993	-		IAI47_18225	0.55	-1.0
3,878,018	+		IAI47_18225	0.57	-0.9
3,878,018	+		IAI47_18225	0.57	+1.6
3,878,018	+		IAI47_18225	0.57	-2.1
3,878,019	-		IAI47_18225	0.57	+1.9
3,878,100	+		IAI47_18225	0.63	-1.1
3,878,101	-		IAI47_18225	0.63	+5.5
3,878,101	-		IAI47_18225	0.63	+3.2
3,878,104	-		IAI47_18225	0.63	+1.2
3,878,113	+		IAI47_18225	0.64	-2.2
3,878,149	+		IAI47_18225	0.67	+2.7
3,878,150	-		IAI47_18225	0.67	+0.3
3,878,158	+		IAI47_18225	0.67	-1.0
3,878,158	+		IAI47_18225	0.67	+1.0
3,878,159	-		IAI47_18225	0.67	+4.4
3,878,159	-		IAI47_18225	0.67	+2.0
3,878,159	-		IAI47_18225	0.67	+0.8
3,878,209	+		IAI47_18225	0.71	+3.2
3,878,209	+		IAI47_18225	0.71	-1.5
3,878,209	+		IAI47_18225	0.71	+1.2
3,878,209	+		IAI47_18225	0.71	+0.3
3,878,210	-		IAI47_18225	0.71	-3.1
3,878,210	-		IAI47_18225	0.71	+1.5
3,878,211	+		IAI47_18225	0.71	-1.9
3,878,211	+		IAI47_18225	0.71	+0.3
3,878,211	+		IAI47_18225	0.71	-2.1
3,878,211	+		IAI47_18225	0.71	+0.5
3,878,211	+		IAI47_18225	0.71	+3.0
3,878,212	-		IAI47_18225	0.71	-0.4
3,878,212	-		IAI47_18225	0.71	-0.2
3,878,212	-		IAI47_18225	0.71	+4.1
3,878,212	-		IAI47_18225	0.71	+3.2
3,878,212	-		IAI47_18225	0.71	+2.4
3,878,212	-		IAI47_18225	0.71	+1.6
3,878,221	+		IAI47_18225	0.72	-0.2
3,878,222	-		IAI47_18225	0.72	-1.5
3,878,222	-		IAI47_18225	0.72	-1.1
3,878,222	-		IAI47_18225	0.72	+4.2
3,878,222	-		IAI47_18225	0.72	+2.9
3,878,222	-		IAI47_18225	0.72	-2.4
3,878,222	-		IAI47_18225	0.72	-1.8
3,878,302	+		IAI47_18225	0.78	+0.6
3,878,303	-		IAI47_18225	0.78	+0.9
3,878,323	+		IAI47_18225	0.80	-1.8
3,878,323	+		IAI47_18225	0.80	+1.4
3,878,323	+		IAI47_18225	0.80	+0.9
3,878,323	+		IAI47_18225	0.80	+0.1
3,878,324	-		IAI47_18225	0.80	+1.0
3,878,324	-		IAI47_18225	0.80	-0.6
3,878,331	+		IAI47_18225	0.80	-1.7
3,878,332	-		IAI47_18225	0.80	-1.8
3,878,346	+		IAI47_18225	0.81	+3.4
3,878,346	+		IAI47_18225	0.81	+0.6
3,878,346	+		IAI47_18225	0.81	-2.2
3,878,346	+		IAI47_18225	0.81	+1.6
3,878,347	-		IAI47_18225	0.81	+0.0
3,878,347	-		IAI47_18225	0.81	-1.1
3,878,347	-		IAI47_18225	0.81	+0.0
3,878,347	-		IAI47_18225	0.81	+0.4
3,878,443	+		IAI47_18225	0.89	-1.7
3,878,451	+		IAI47_18225	0.89	+0.2
3,878,451	+		IAI47_18225	0.89	+2.8
3,878,451	+		IAI47_18225	0.89	+0.6
3,878,452	-		IAI47_18225	0.89	-2.5
3,878,515	+				-1.5
3,878,516	-				+0.6
3,878,516	-				-1.7
3,878,571	+				-1.7
3,878,571	+				+0.8
3,878,571	+				+1.6
3,878,571	+				+0.6
3,878,571	+				+3.3
3,878,572	-				-2.3
3,878,572	-				-1.9
3,878,572	-				-2.4
3,878,572	-				-2.6
3,878,572	-				-1.4
3,878,572	-				+2.6
3,878,572	-				+2.8
3,878,572	-				-0.6
3,878,572	-				+4.0
3,878,630	+				-2.8
3,878,630	+				+2.9
3,878,630	+				+1.8
3,878,631	-				+1.7
3,878,636	-				+1.3
3,878,636	-				+2.4
3,878,679	+				-3.1
3,878,687	-				+2.0
3,878,687	-				-1.1
3,878,708	+				+1.6
3,878,787	+				-2.6
3,878,787	+				-0.1
3,878,787	+				-1.9
3,878,787	+				+0.6
3,878,787	+				+0.0
3,878,788	-				-2.6
3,878,788	-				-0.2
3,878,788	-				-1.9
3,878,804	+				+2.0
3,878,804	+				-0.6
3,878,804	+				-0.6
3,878,804	+				+1.7
3,878,804	+				-3.3
3,878,804	+				+2.5
3,878,804	+				+0.7
3,878,804	+				+1.4
3,878,804	+				-2.8
3,878,804	+				+0.3
3,878,804	+				+2.8
3,878,805	-				+2.3
3,878,805	-				+3.0
3,878,805	-				+1.5
3,878,805	-				+2.5
3,878,805	-				-1.1
3,878,876	+				+2.4
3,878,961	-				+1.2
3,878,972	+				+3.7
3,878,972	+				+2.7
3,878,973	-				+4.8
3,878,973	-				+1.0
3,878,973	-				+1.7
3,878,973	-				+1.8
3,878,973	-				+2.3
3,878,987	+				-1.4
3,878,987	+				-4.1
3,879,011	+		IAI47_18230	0.11	-0.7
3,879,011	+		IAI47_18230	0.11	-0.6
3,879,011	+		IAI47_18230	0.11	-0.1
3,879,011	+		IAI47_18230	0.11	+1.9
3,879,012	-		IAI47_18230	0.11	-3.3
3,879,048	+		IAI47_18230	0.12	+2.7
3,879,048	+		IAI47_18230	0.12	-0.6
3,879,048	+		IAI47_18230	0.12	-0.6
3,879,048	+		IAI47_18230	0.12	-1.0
3,879,049	-		IAI47_18230	0.12	+0.9
3,879,049	-		IAI47_18230	0.12	-1.9
3,879,082	+		IAI47_18230	0.14	+0.5
3,879,114	+		IAI47_18230	0.15	-2.0
3,879,154	-		IAI47_18230	0.17	-0.2
3,879,161	+		IAI47_18230	0.17	+2.9
3,879,161	+		IAI47_18230	0.17	-2.6
3,879,162	-		IAI47_18230	0.17	+2.4
3,879,162	-		IAI47_18230	0.17	+2.3
3,879,162	-		IAI47_18230	0.17	+1.7
3,879,167	+		IAI47_18230	0.18	-3.0
3,879,167	+		IAI47_18230	0.18	+0.2
3,879,168	-		IAI47_18230	0.18	-0.2
3,879,168	-		IAI47_18230	0.18	-0.4
3,879,168	-		IAI47_18230	0.18	+1.3
3,879,279	-		IAI47_18230	0.23	-1.7
3,879,279	-		IAI47_18230	0.23	+1.9
3,879,480	-		IAI47_18230	0.32	+2.1
3,879,512	+		IAI47_18230	0.33	-2.1
3,879,512	+		IAI47_18230	0.33	+1.6
3,879,512	+		IAI47_18230	0.33	-3.1
3,879,513	-		IAI47_18230	0.34	+0.5
3,879,513	-		IAI47_18230	0.34	-1.2
3,879,669	+		IAI47_18230	0.41	-2.7
3,879,669	+		IAI47_18230	0.41	-3.4
3,879,669	+		IAI47_18230	0.41	-2.4
3,879,669	+		IAI47_18230	0.41	-2.5
3,879,670	-		IAI47_18230	0.41	-1.6
3,879,670	-		IAI47_18230	0.41	-1.2
3,879,730	+		IAI47_18230	0.43	-0.9
3,879,731	-		IAI47_18230	0.43	-1.2
3,879,746	+		IAI47_18230	0.44	-0.4
3,879,746	+		IAI47_18230	0.44	-0.4
3,879,747	-		IAI47_18230	0.44	-1.8
3,879,765	+		IAI47_18230	0.45	-3.0
3,879,765	+		IAI47_18230	0.45	-1.9
3,879,765	+		IAI47_18230	0.45	+0.4
3,879,766	-		IAI47_18230	0.45	-0.2
3,879,766	-		IAI47_18230	0.45	+0.0
3,879,806	+		IAI47_18230	0.47	+1.6
3,879,806	+		IAI47_18230	0.47	+0.3
3,879,806	+		IAI47_18230	0.47	-0.9
3,879,806	+		IAI47_18230	0.47	-0.3
3,879,807	-		IAI47_18230	0.47	-1.1
3,879,807	-		IAI47_18230	0.47	-1.9
3,879,807	-		IAI47_18230	0.47	-3.2
3,879,807	-		IAI47_18230	0.47	+2.4
3,879,807	-		IAI47_18230	0.47	-2.1
3,879,807	-		IAI47_18230	0.47	-1.6
3,879,848	+		IAI47_18230	0.49	-2.6
3,879,848	+		IAI47_18230	0.49	-2.3
3,879,849	-		IAI47_18230	0.49	+3.1
3,879,849	-		IAI47_18230	0.49	-0.6
3,879,853	+		IAI47_18230	0.49	-2.1
3,879,854	-		IAI47_18230	0.49	+2.1
3,879,854	-		IAI47_18230	0.49	+1.1
3,879,857	+		IAI47_18230	0.49	-1.8
3,879,857	+		IAI47_18230	0.49	+2.2
3,879,857	+		IAI47_18230	0.49	-1.2
3,879,857	+		IAI47_18230	0.49	-0.6
3,879,857	+		IAI47_18230	0.49	-1.9
3,879,857	+				+2.6
3,879,857	+		IAI47_18230	0.49	-1.0
3,879,857	+		IAI47_18230	0.49	-0.7
3,879,858	-		IAI47_18230	0.49	-0.4
3,879,858	-		IAI47_18230	0.49	-1.1
3,879,858	-		IAI47_18230	0.49	-0.9
3,879,858	-		IAI47_18230	0.49	+2.5
3,879,858	-		IAI47_18230	0.49	-0.4
3,879,858	-		IAI47_18230	0.49	-1.4
3,879,858	-		IAI47_18230	0.49	-2.6
3,879,858	-		IAI47_18230	0.49	-2.3
3,879,858	-		IAI47_18230	0.49	+2.2
3,879,858	-		IAI47_18230	0.49	+3.4
3,879,858	-		IAI47_18230	0.49	-1.4
3,879,858	-		IAI47_18230	0.49	+3.4
3,879,860	+		IAI47_18230	0.49	-2.8
3,879,860	+		IAI47_18230	0.49	-0.7
3,879,860	+		IAI47_18230	0.49	-1.9
3,879,860	+		IAI47_18230	0.49	+1.1
3,879,860	+		IAI47_18230	0.49	+0.9
3,879,860	+		IAI47_18230	0.49	+1.3
3,879,860	+		IAI47_18230	0.49	-1.9
3,879,860	+		IAI47_18230	0.49	+2.2
3,879,860	+		IAI47_18230	0.49	-2.8
3,879,860	+		IAI47_18230	0.49	-3.3
3,879,860	+		IAI47_18230	0.49	-2.0
3,879,860	+		IAI47_18230	0.49	+2.0
3,879,860	+		IAI47_18230	0.49	-3.8
3,879,860	+		IAI47_18230	0.49	-0.7
3,879,860	+		IAI47_18230	0.49	-0.7
3,879,861	-		IAI47_18230	0.49	-0.9
3,879,861	-		IAI47_18230	0.49	-3.5
3,879,861	-		IAI47_18230	0.49	+3.4
3,879,861	-		IAI47_18230	0.49	+1.5
3,879,868	+		IAI47_18230	0.50	-3.7
3,879,868	+		IAI47_18230	0.50	+1.2
3,879,868	+		IAI47_18230	0.50	-2.5
3,879,869	-		IAI47_18230	0.50	+0.0
3,879,917	+		IAI47_18230	0.52	+1.0
3,879,937	-		IAI47_18230	0.53	+2.6
3,879,937	-		IAI47_18230	0.53	+1.3
3,880,058	+		IAI47_18230	0.58	-1.6
3,880,059	-		IAI47_18230	0.59	+2.2
3,880,059	-		IAI47_18230	0.59	+0.0
3,880,059	-		IAI47_18230	0.59	+2.7
3,880,059	-		IAI47_18230	0.59	-1.4
3,880,059	-		IAI47_18230	0.59	-1.7
3,880,073	+		IAI47_18230	0.59	+0.0
3,880,073	+		IAI47_18230	0.59	-1.2
3,880,073	+		IAI47_18230	0.59	+0.3
3,880,074	-		IAI47_18230	0.59	+1.0
3,880,074	-		IAI47_18230	0.59	-1.1
3,880,148	+		IAI47_18230	0.63	+1.2
3,880,148	+		IAI47_18230	0.63	+0.9
3,880,148	+		IAI47_18230	0.63	-0.1
3,880,148	+		IAI47_18230	0.63	-1.4
3,880,148	+		IAI47_18230	0.63	+1.3
3,880,148	+		IAI47_18230	0.63	+2.2
3,880,149	-		IAI47_18230	0.63	-3.7
3,880,149	-		IAI47_18230	0.63	+0.0
3,880,149	-		IAI47_18230	0.63	-2.5
3,880,149	-		IAI47_18230	0.63	+0.3
3,880,149	-		IAI47_18230	0.63	+1.5
3,880,149	-		IAI47_18230	0.63	+1.5
3,880,149	-		IAI47_18230	0.63	-2.0
3,880,149	-		IAI47_18230	0.63	-2.7
3,880,149	-		IAI47_18230	0.63	-0.2
3,880,202	+		IAI47_18230	0.65	+1.2
3,880,202	+		IAI47_18230	0.65	-0.6
3,880,202	+		IAI47_18230	0.65	-1.6
3,880,202	+		IAI47_18230	0.65	-2.2
3,880,203	-		IAI47_18230	0.65	+1.3
3,880,203	-		IAI47_18230	0.65	+1.1
3,880,203	-		IAI47_18230	0.65	+0.6
3,880,275	-		IAI47_18230	0.68	-3.4
3,880,293	+		IAI47_18230	0.69	+2.5
3,880,294	-		IAI47_18230	0.69	+1.9
3,880,294	-		IAI47_18230	0.69	-2.1
3,880,349	+		IAI47_18230	0.72	+0.0
3,880,349	+		IAI47_18230	0.72	+0.3
3,880,349	+		IAI47_18230	0.72	-3.0
3,880,350	-		IAI47_18230	0.72	+0.3
3,880,350	-		IAI47_18230	0.72	-2.6
3,880,350	-		IAI47_18230	0.72	-2.7
3,880,350	-		IAI47_18230	0.72	-2.6
3,880,350	-		IAI47_18230	0.72	-1.5
3,880,354	+		IAI47_18230	0.72	-0.9
3,880,354	+		IAI47_18230	0.72	-0.6
3,880,355	-		IAI47_18230	0.72	-0.4
3,880,355	-		IAI47_18230	0.72	-3.3
3,880,355	-		IAI47_18230	0.72	+1.5
3,880,355	-		IAI47_18230	0.72	-2.0
3,880,355	-		IAI47_18230	0.72	-2.3
3,880,408	+		IAI47_18230	0.74	+1.5
3,880,408	+		IAI47_18230	0.74	-2.1
3,880,408	+		IAI47_18230	0.74	-1.9
3,880,409	-		IAI47_18230	0.75	+0.0
3,880,409	-		IAI47_18230	0.75	+1.6
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