Strain Fitness in Pantoea sp. MT58 around IAI47_17890

Experiment: Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,797,942	-		IAI47_17885	0.35	-2.7
3,797,963	-		IAI47_17885	0.36	-0.4
3,797,963	-		IAI47_17885	0.36	+1.1
3,797,969	+		IAI47_17885	0.37	+0.0
3,797,969	+		IAI47_17885	0.37	+4.5
3,797,970	-		IAI47_17885	0.37	-1.2
3,797,975	+		IAI47_17885	0.37	-0.6
3,797,975	+		IAI47_17885	0.37	+2.3
3,797,975	+		IAI47_17885	0.37	-0.4
3,797,975	+		IAI47_17885	0.37	+0.3
3,797,976	-		IAI47_17885	0.37	-0.4
3,797,976	-		IAI47_17885	0.37	+2.5
3,797,976	-		IAI47_17885	0.37	-0.2
3,797,976	-		IAI47_17885	0.37	+1.5
3,797,976	-		IAI47_17885	0.37	-2.1
3,797,988	+		IAI47_17885	0.38	-1.4
3,797,988	+		IAI47_17885	0.38	-1.1
3,797,988	+		IAI47_17885	0.38	-0.9
3,797,989	-		IAI47_17885	0.38	+0.7
3,797,989	-		IAI47_17885	0.38	+0.0
3,797,989	-		IAI47_17885	0.38	-1.7
3,797,989	-		IAI47_17885	0.38	-1.9
3,797,989	-		IAI47_17885	0.38	-1.7
3,797,989	-		IAI47_17885	0.38	-1.9
3,797,989	-		IAI47_17885	0.38	-0.5
3,797,991	+		IAI47_17885	0.38	+0.6
3,797,992	-		IAI47_17885	0.38	-2.3
3,798,086	+		IAI47_17885	0.46	+1.1
3,798,086	+		IAI47_17885	0.46	+2.3
3,798,147	-		IAI47_17885	0.50	+2.0
3,798,152	+		IAI47_17885	0.50	-2.7
3,798,152	+		IAI47_17885	0.50	-0.7
3,798,153	-		IAI47_17885	0.51	+3.1
3,798,153	-		IAI47_17885	0.51	+3.0
3,798,155	+		IAI47_17885	0.51	-2.4
3,798,155	+		IAI47_17885	0.51	-1.5
3,798,168	+		IAI47_17885	0.52	+0.0
3,798,168	+		IAI47_17885	0.52	+2.7
3,798,169	-		IAI47_17885	0.52	-1.8
3,798,169	-		IAI47_17885	0.52	-0.7
3,798,169	-		IAI47_17885	0.52	+3.0
3,798,169	-		IAI47_17885	0.52	-0.7
3,798,211	+		IAI47_17885	0.55	-1.8
3,798,211	+		IAI47_17885	0.55	+1.5
3,798,211	+		IAI47_17885	0.55	-3.6
3,798,211	+		IAI47_17885	0.55	+0.3
3,798,211	+		IAI47_17885	0.55	-2.0
3,798,212	-		IAI47_17885	0.55	-0.9
3,798,310	-		IAI47_17885	0.62	+2.4
3,798,310	-		IAI47_17885	0.62	+1.8
3,798,310	-		IAI47_17885	0.62	-0.9
3,798,310	-		IAI47_17885	0.62	+2.6
3,798,338	-		IAI47_17885	0.65	-1.7
3,798,413	+		IAI47_17885	0.70	+2.8
3,798,435	+		IAI47_17885	0.72	+1.3
3,798,435	+		IAI47_17885	0.72	-1.9
3,798,435	+		IAI47_17885	0.72	+2.5
3,798,436	-		IAI47_17885	0.72	-1.3
3,798,436	-		IAI47_17885	0.72	-1.2
3,798,436	-		IAI47_17885	0.72	-1.9
3,798,436	-		IAI47_17885	0.72	+2.6
3,798,453	+		IAI47_17885	0.73	+1.2
3,798,453	+		IAI47_17885	0.73	-2.3
3,798,454	-		IAI47_17885	0.73	+1.7
3,798,454	-		IAI47_17885	0.73	-1.3
3,798,564	-		IAI47_17885	0.82	-1.7
3,798,602	+		IAI47_17885	0.85	-0.9
3,798,603	-		IAI47_17885	0.85	+0.3
3,798,629	+		IAI47_17885	0.87	+0.1
3,798,630	-		IAI47_17885	0.87	+1.6
3,798,630	-		IAI47_17885	0.87	-1.2
3,798,630	-		IAI47_17885	0.87	+0.0
3,798,630	-		IAI47_17885	0.87	+0.9
3,798,676	+				+1.2
3,798,676	+				+0.3
3,798,677	-				-2.0
3,798,701	+				-1.5
3,798,701	+				+1.5
3,798,701	+				-1.8
3,798,702	-				+4.6
3,798,702	-				-0.6
3,798,702	-				+1.1
3,798,710	+				+2.0
3,798,740	+				-1.4
3,798,740	+				-2.2
3,798,741	-				-0.2
3,798,741	-				+0.4
3,798,741	-				-0.7
3,798,741	-				-1.9
3,798,741	-				-1.8
3,798,741	-				-0.6
3,798,797	+				-2.3
3,798,798	-				+3.8
3,798,798	-				+1.0
3,798,868	+				-3.3
3,798,868	+				+0.6
3,798,868	+				+2.2
3,798,868	+				+0.4
3,798,868	+				+0.5
3,798,868	+				+2.3
3,798,868	+				+2.0
3,798,869	-				+2.1
3,798,869	-				-1.0
3,798,869	-				-2.3
3,798,869	-				-3.2
3,798,869	-				-1.9
3,798,869	-				-1.9
3,799,540	-				+1.9
3,799,540	-				-0.9
3,799,555	-				+1.8
3,799,555	-				+2.5
3,799,556	+				-0.7
3,799,557	-				+2.4
3,799,557	-				+0.7
3,799,557	-				+3.2
3,799,557	-				-0.6
3,799,557	-				+3.1
3,799,557	-				-1.1
3,799,558	+				-1.0
3,799,558	+				-1.9
3,799,558	+				-2.2
3,799,559	-				+2.2
3,799,559	-				+3.6
3,799,559	-				+0.1
3,799,559	-				-0.9
3,799,615	+				+1.6
3,799,627	-				+2.3
3,799,627	-				+3.7
3,799,673	+		IAI47_17895	0.13	+2.5
3,799,673	+		IAI47_17895	0.13	-1.3
3,799,673	+		IAI47_17895	0.13	+1.7
3,799,673	+		IAI47_17895	0.13	-3.0
3,799,673	+		IAI47_17895	0.13	+1.1
3,799,673	+		IAI47_17895	0.13	+2.6
3,799,673	+		IAI47_17895	0.13	+2.3
3,799,674	-		IAI47_17895	0.13	-0.2
3,799,674	-		IAI47_17895	0.13	-0.6
3,799,674	-		IAI47_17895	0.13	-0.9
3,799,674	-		IAI47_17895	0.13	+0.2
3,799,674	-		IAI47_17895	0.13	+0.0
3,799,774	+		IAI47_17895	0.40	-1.3
3,799,862	-		IAI47_17895	0.64	-3.0
3,799,862	-		IAI47_17895	0.64	+4.0
3,799,862	-		IAI47_17895	0.64	+3.6
3,799,864	+		IAI47_17895	0.65	-0.3
3,799,864	+		IAI47_17895	0.65	-1.0
3,799,864	+		IAI47_17895	0.65	+3.2
3,799,864	+		IAI47_17895	0.65	+0.3
3,799,864	+		IAI47_17895	0.65	+1.7
3,799,864	+		IAI47_17895	0.65	+1.2
3,799,864	+		IAI47_17895	0.65	-2.4
3,799,864	+		IAI47_17895	0.65	-1.2
3,799,865	-		IAI47_17895	0.65	-0.6
3,799,865	-		IAI47_17895	0.65	+1.6
3,799,865	-		IAI47_17895	0.65	-0.9
3,799,865	-		IAI47_17895	0.65	-1.3
3,799,944	+		IAI47_17895	0.86	-0.4
3,799,944	+		IAI47_17895	0.86	+3.1
3,799,944	+		IAI47_17895	0.86	-1.1
3,799,945	-		IAI47_17895	0.87	-0.0
3,799,958	+				+1.0
3,799,961	+				+2.8
3,799,961	+				-1.2
3,799,961	+				+2.5
3,799,961	+				-0.7
3,799,962	-				+1.2
3,799,962	-				+2.0
3,799,962	-				+3.2
3,799,962	-				+1.6
3,799,970	-				-1.7
3,799,984	+				-0.7
3,799,984	+				-1.5
3,799,984	+				+0.3
3,799,984	+				+2.2
3,799,985	-				-2.0
3,799,985	-				-1.3