Strain Fitness in Pantoea sp. MT58 around IAI47_17475

Experiment: Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,703,835	+		IAI47_17470	0.43	+0.8
3,703,835	+		IAI47_17470	0.43	-1.5
3,703,835	+		IAI47_17470	0.43	-2.9
3,703,835	+		IAI47_17470	0.43	+1.6
3,703,836	-		IAI47_17470	0.43	+2.5
3,703,836	-		IAI47_17470	0.43	+1.6
3,703,836	-		IAI47_17470	0.43	+1.7
3,703,836	-		IAI47_17470	0.43	+1.6
3,703,836	-		IAI47_17470	0.43	-0.2
3,703,872	-		IAI47_17470	0.45	-0.4
3,703,872	-		IAI47_17470	0.45	-1.5
3,703,908	-		IAI47_17470	0.47	-1.3
3,703,991	+		IAI47_17470	0.53	+2.7
3,703,992	-		IAI47_17470	0.53	-1.3
3,703,992	-		IAI47_17470	0.53	-0.7
3,703,992	-		IAI47_17470	0.53	-2.3
3,704,009	+		IAI47_17470	0.54	-1.0
3,704,009	+		IAI47_17470	0.54	-2.0
3,704,009	+		IAI47_17470	0.54	-2.8
3,704,009	+		IAI47_17470	0.54	-0.1
3,704,009	+		IAI47_17470	0.54	-1.9
3,704,009	+		IAI47_17470	0.54	-1.3
3,704,010	-		IAI47_17470	0.54	+0.0
3,704,010	-		IAI47_17470	0.54	+3.0
3,704,010	-		IAI47_17470	0.54	+0.7
3,704,121	+		IAI47_17470	0.61	-1.1
3,704,121	+		IAI47_17470	0.61	-1.8
3,704,165	+		IAI47_17470	0.64	+1.9
3,704,210	+		IAI47_17470	0.67	-0.7
3,704,211	-		IAI47_17470	0.67	+3.7
3,704,211	-		IAI47_17470	0.67	+0.5
3,704,211	-		IAI47_17470	0.67	-0.7
3,704,211	-		IAI47_17470	0.67	-2.1
3,704,220	+		IAI47_17470	0.67	+1.0
3,704,222	+		IAI47_17470	0.68	-2.1
3,704,222	+		IAI47_17470	0.68	-2.0
3,704,222	+		IAI47_17470	0.68	-3.2
3,704,222	+		IAI47_17470	0.68	-0.5
3,704,222	+		IAI47_17470	0.68	+1.2
3,704,222	+		IAI47_17470	0.68	-2.2
3,704,222	+		IAI47_17470	0.68	+0.2
3,704,222	+		IAI47_17470	0.68	-2.7
3,704,222	+		IAI47_17470	0.68	-2.2
3,704,222	+		IAI47_17470	0.68	-0.3
3,704,222	+		IAI47_17470	0.68	-1.8
3,704,222	+		IAI47_17470	0.68	-1.0
3,704,223	-		IAI47_17470	0.68	+3.6
3,704,223	-		IAI47_17470	0.68	+1.9
3,704,223	-		IAI47_17470	0.68	+3.4
3,704,223	-		IAI47_17470	0.68	+1.8
3,704,223	-		IAI47_17470	0.68	+1.0
3,704,223	-		IAI47_17470	0.68	-2.5
3,704,223	-		IAI47_17470	0.68	-2.3
3,704,223	-		IAI47_17470	0.68	+0.7
3,704,223	-		IAI47_17470	0.68	-1.8
3,704,223	-		IAI47_17470	0.68	-0.2
3,704,223	-		IAI47_17470	0.68	+4.0
3,704,223	-		IAI47_17470	0.68	+3.2
3,704,223	-		IAI47_17470	0.68	-2.4
3,704,223	-		IAI47_17470	0.68	+1.7
3,704,223	-		IAI47_17470	0.68	+4.0
3,704,223	-		IAI47_17470	0.68	+1.6
3,704,223	-		IAI47_17470	0.68	+0.5
3,704,223	-		IAI47_17470	0.68	-0.3
3,704,223	-		IAI47_17470	0.68	-2.3
3,704,223	-		IAI47_17470	0.68	+0.9
3,704,232	+		IAI47_17470	0.68	+0.0
3,704,233	-		IAI47_17470	0.68	-1.4
3,704,234	+		IAI47_17470	0.68	-1.5
3,704,234	+		IAI47_17470	0.68	+3.2
3,704,234	+		IAI47_17470	0.68	-1.7
3,704,235	-		IAI47_17470	0.68	-0.4
3,704,235	-		IAI47_17470	0.68	-0.2
3,704,235	-		IAI47_17470	0.68	-2.3
3,704,298	+		IAI47_17470	0.72	-3.0
3,704,298	+		IAI47_17470	0.72	+2.1
3,704,298	+		IAI47_17470	0.72	+0.0
3,704,298	+		IAI47_17470	0.72	+1.3
3,704,298	+		IAI47_17470	0.72	+0.7
3,704,298	+		IAI47_17470	0.72	-0.8
3,704,299	-		IAI47_17470	0.72	+1.2
3,704,449	-		IAI47_17470	0.82	+0.6
3,704,645	+				+1.9
3,704,645	+				+0.3
3,704,646	-				-1.9
3,704,710	+				-1.6
3,704,732	-				-1.9
3,704,734	+				-0.7
3,704,734	+				+0.0
3,704,735	-				-1.4
3,704,735	-				-0.4
3,704,735	-				-2.9
3,704,735	-				+1.7
3,704,742	+				-0.5
3,704,742	+				-1.1
3,704,743	-				-2.1
3,704,801	-		IAI47_17475	0.10	-2.2
3,704,869	+		IAI47_17475	0.24	-1.3
3,704,882	-		IAI47_17475	0.27	+0.3
3,704,882	-		IAI47_17475	0.27	+1.1
3,704,958	+		IAI47_17475	0.42	+1.8
3,704,959	-		IAI47_17475	0.42	-1.1
3,704,959	-		IAI47_17475	0.42	-1.4
3,705,025	+		IAI47_17475	0.55	-1.9
3,705,026	-		IAI47_17475	0.55	-1.5
3,705,069	+		IAI47_17475	0.64	+1.6
3,705,078	+		IAI47_17475	0.66	-0.4
3,705,142	+		IAI47_17475	0.78	-1.5
3,705,143	-		IAI47_17475	0.79	-2.4
3,705,143	-		IAI47_17475	0.79	+1.9
3,705,143	-		IAI47_17475	0.79	-0.5
3,705,204	+				-2.1
3,705,221	-				+2.5
3,705,264	+				+1.5
3,705,264	+				+3.4
3,705,264	+				+1.3
3,705,265	-				+0.4
3,705,265	-				+2.5
3,705,265	-				+0.1
3,705,314	-				+1.0
3,705,462	+				-2.0
3,705,473	+				+0.9
3,705,474	-				+4.0
3,705,474	-				-1.4
3,705,510	+				-1.4
3,705,511	-				-1.3
3,705,518	+				-2.3
3,705,518	+				-0.7
3,705,617	+				-1.9
3,705,618	-				-1.6
3,705,635	+				+0.5
3,705,675	+				-0.7
3,705,684	+				+0.5
3,705,692	+				+0.6
3,705,692	+				-0.7
3,705,748	-				-1.0
3,705,807	+				+2.0
3,705,889	+				+0.4
3,705,932	+				-0.2
3,705,933	-				+5.1
3,706,014	+				-0.4
3,706,014	+				-0.5
3,706,018	+				-0.7
3,706,018	+				+3.4
3,706,018	+				-0.7
3,706,019	-				-2.5
3,706,045	+				+0.3
3,706,045	+				-0.1
3,706,048	+				-0.4
3,706,048	+				-2.0
3,706,048	+				+1.9
3,706,048	+				+2.2
3,706,048	+				+2.6
3,706,048	+				-1.9
3,706,048	+				-0.8
3,706,048	+				-0.4
3,706,048	+				-2.4
3,706,048	+				+0.6
3,706,048	+				+1.0
3,706,048	+				+1.6
3,706,048	+				-1.5
3,706,049	-				-0.5
3,706,049	-				+2.7
3,706,049	-				-1.8
3,706,049	-				-2.4
3,706,049	-				-2.5
3,706,049	-				-0.7
3,706,049	-				-1.0
3,706,049	-				+1.6
3,706,050	+				-1.3
3,706,050	+				-1.4
3,706,050	+				+1.0
3,706,050	+				+0.7
3,706,050	+				-0.7
3,706,050	+				-2.2
3,706,050	+				-0.2
3,706,050	+				+0.7
3,706,050	+				+1.3
3,706,050	+				-0.4
3,706,050	+				-2.8
3,706,051	-				-0.7
3,706,051	-				+2.6
3,706,051	-				+4.1
3,706,051	-				-2.5
3,706,051	-				-2.4
3,706,051	-				+0.0
3,706,051	-				+0.3
3,706,051	-				-1.2
3,706,051	-				-2.6
3,706,051	-				-2.4
3,706,051	-				+0.6
3,706,051	-				-2.7
3,706,100	+				-1.4
3,706,135	+				+1.4
3,706,152	-				+2.6
3,706,170	-				+0.3
3,706,182	+				-1.8
3,706,183	-				-1.5
3,706,201	+				+2.4
3,706,201	+				-0.1
3,706,201	+				+2.4
3,706,202	-				+3.1
3,706,209	-				+0.6
3,706,214	+				-2.9
3,706,214	+				-2.9
3,706,214	+				+0.0
3,706,214	+				-1.2
3,706,215	-				+3.9
3,706,215	-				-1.1
3,706,215	-				-1.8
3,706,215	-				-0.2
3,706,217	-				+0.3
3,706,227	+				+0.6
3,706,247	+				-1.7
3,706,247	+				-1.6
3,706,248	-				-1.2
3,706,248	-				-2.5
3,706,248	-				-0.5
3,706,248	-				-0.5
3,706,249	+				+1.8
3,706,249	+				+0.3
3,706,249	+				-1.5