Strain Fitness in Pantoea sp. MT58 around IAI47_15155

Experiment: Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,194,531	+				-0.7
3,194,531	+				+0.6
3,194,532	-				+3.1
3,194,532	-				+2.5
3,194,539	-				-0.9
3,194,539	-				-0.7
3,194,564	-				+2.8
3,194,566	-				+0.6
3,194,614	-				+0.1
3,194,622	+				+3.0
3,194,623	-				-1.0
3,194,644	+				-0.9
3,194,645	-				+0.6
3,194,648	-				+0.1
3,194,648	-				-0.9
3,194,650	-				-1.4
3,194,650	-				+1.4
3,194,666	+				+2.0
3,194,670	+				-2.0
3,194,671	-				-2.4
3,194,680	+				+0.4
3,194,681	-				+3.6
3,194,691	+				-1.6
3,194,692	-				+2.0
3,194,696	+				-0.9
3,194,708	+				-0.4
3,194,726	+				-1.5
3,194,727	-				-1.7
3,194,755	+				+0.6
3,194,755	+				+0.1
3,194,755	+				-2.4
3,194,769	+				-0.4
3,194,801	+		IAI47_15150	0.12	-0.4
3,194,801	+		IAI47_15150	0.12	+1.9
3,194,802	-		IAI47_15150	0.12	-0.3
3,194,901	+		IAI47_15150	0.24	-1.4
3,194,954	+		IAI47_15150	0.30	-0.7
3,194,955	-		IAI47_15150	0.30	-2.3
3,195,004	+		IAI47_15150	0.36	-0.4
3,195,004	+		IAI47_15150	0.36	-2.7
3,195,005	-		IAI47_15150	0.36	+1.3
3,195,005	-		IAI47_15150	0.36	-1.1
3,195,036	+		IAI47_15150	0.40	-0.8
3,195,036	+		IAI47_15150	0.40	-0.4
3,195,037	-		IAI47_15150	0.40	+2.1
3,195,069	+		IAI47_15150	0.44	-2.3
3,195,069	+		IAI47_15150	0.44	-0.7
3,195,099	+		IAI47_15150	0.48	+3.5
3,195,099	+		IAI47_15150	0.48	+2.9
3,195,100	-		IAI47_15150	0.48	-2.2
3,195,103	-		IAI47_15150	0.48	-2.3
3,195,134	+		IAI47_15150	0.52	+1.7
3,195,135	-		IAI47_15150	0.52	+2.1
3,195,177	+		IAI47_15150	0.57	-2.3
3,195,177	+		IAI47_15150	0.57	+2.8
3,195,185	-		IAI47_15150	0.58	+0.5
3,195,221	+		IAI47_15150	0.62	+1.2
3,195,251	+		IAI47_15150	0.66	-0.5
3,195,251	+		IAI47_15150	0.66	+1.8
3,195,262	+		IAI47_15150	0.67	+0.9
3,195,262	+		IAI47_15150	0.67	-3.1
3,195,262	+		IAI47_15150	0.67	-0.8
3,195,262	+		IAI47_15150	0.67	-2.4
3,195,263	-		IAI47_15150	0.67	+1.9
3,195,263	-		IAI47_15150	0.67	-0.5
3,195,265	-		IAI47_15150	0.67	-0.7
3,195,292	-		IAI47_15150	0.70	+1.1
3,195,306	+		IAI47_15150	0.72	-0.4
3,195,314	+		IAI47_15150	0.73	+0.9
3,195,328	-		IAI47_15150	0.75	+2.6
3,195,328	-		IAI47_15150	0.75	+3.1
3,195,328	-		IAI47_15150	0.75	-0.3
3,195,333	+		IAI47_15150	0.75	-0.9
3,195,336	+		IAI47_15150	0.76	-1.3
3,195,361	+		IAI47_15150	0.79	+3.4
3,195,361	+		IAI47_15150	0.79	+1.6
3,195,364	-		IAI47_15150	0.79	-0.3
3,195,368	+		IAI47_15150	0.79	+2.4
3,195,369	-		IAI47_15150	0.80	+2.8
3,195,399	+		IAI47_15150	0.83	-1.2
3,195,400	-		IAI47_15150	0.83	+1.1
3,195,400	-		IAI47_15150	0.83	-2.0
3,195,401	+		IAI47_15150	0.83	+2.0
3,195,402	-		IAI47_15150	0.84	+0.3
3,195,461	-				-1.5
3,195,510	-				-2.3
3,195,522	+				+0.4
3,195,522	+				+0.9
3,195,558	+				+4.1
3,195,590	+		IAI47_15155	0.14	+2.9
3,195,591	-		IAI47_15155	0.14	-1.4
3,195,597	+		IAI47_15155	0.16	-3.2
3,195,741	-		IAI47_15155	0.46	-1.1
3,195,774	-		IAI47_15155	0.53	-0.8
3,195,820	+		IAI47_15155	0.63	-1.1
3,195,820	+		IAI47_15155	0.63	+0.6
3,195,820	+		IAI47_15155	0.63	+2.0
3,195,824	+		IAI47_15155	0.64	+1.0
3,195,824	+		IAI47_15155	0.64	-1.3
3,195,824	+		IAI47_15155	0.64	-0.7
3,195,824	+		IAI47_15155	0.64	+3.2
3,195,920	-		IAI47_15155	0.85	-2.4
3,195,920	-		IAI47_15155	0.85	+2.6
3,195,945	-				+0.4
3,195,990	-				+2.2
3,196,018	-				+0.6
3,196,072	+				-1.1
3,196,073	-				+0.8
3,196,087	+				-0.2
3,196,088	-				+3.1
3,196,088	-				+2.6
3,196,088	-				+2.3
3,196,091	-				-0.4
3,196,104	-				+1.0
3,196,106	-				-2.5
3,196,118	+				+1.5
3,196,121	+				-0.7
3,196,137	-				+0.1
3,196,158	-				+3.0
3,196,210	+				-0.9
3,196,211	-				-2.4
3,196,222	+				+2.8
3,196,222	+				+0.9
3,196,222	+				+0.4
3,196,223	-				-1.3
3,196,223	-				-0.9
3,196,223	-				-0.8
3,196,223	-				-1.3
3,196,223	-				-0.5
3,196,223	-				+2.4
3,196,223	-				-0.9
3,196,246	-				-1.6
3,196,292	+				-0.1
3,196,292	+				-2.9
3,196,338	+				+3.6
3,196,338	+				+1.9
3,196,338	+				-2.4
3,196,338	+				-1.1
3,196,338	+				-1.3
3,196,338	+				-0.7
3,196,338	+				+1.0
3,196,339	-				+1.2
3,196,339	-				-2.4
3,196,339	-				+3.8
3,196,339	-				+2.6
3,196,339	-				-3.7
3,196,339	-				-2.2
3,196,339	-				-0.5
3,196,339	-				-2.1
3,196,339	-				+2.9
3,196,339	-				-0.4
3,196,342	+				+3.1
3,196,342	+				+5.6
3,196,342	+				-0.5
3,196,342	+				+0.0
3,196,343	-				-0.2
3,196,343	-				+1.4
3,196,343	-				-2.9
3,196,349	+				+1.5
3,196,370	+				-1.9
3,196,370	+				+2.6
3,196,370	+				+3.2
3,196,372	+				-1.6
3,196,373	-				-1.2
3,196,395	-				-0.4
3,196,395	-				+0.6
3,196,427	-				-0.2
3,196,468	+				-2.8
3,196,468	+				+4.4
3,196,506	+				+1.1
3,196,507	-				+0.8
3,196,507	-				-0.2
3,196,507	-				-0.4
3,196,507	-				+3.1
3,196,507	-				+1.1
3,196,511	+				+3.4
3,196,511	+				-2.7
3,196,511	+				+1.9
3,196,511	+				-1.1
3,196,512	-				-2.3
3,196,512	-				+1.1
3,196,512	-				-0.9
3,196,512	-				-1.5
3,196,512	-				+0.2
3,196,512	-				-2.9
3,196,512	-				-1.9
3,196,616	+				+0.4
3,196,617	-				+2.5
3,196,617	-				+0.2
3,196,619	+				+0.6
3,196,619	+				-1.4
3,196,619	+				-1.3
3,196,619	+				+0.5
3,196,619	+				-0.5
3,196,619	+				+3.4
3,196,619	+				+0.7
3,196,619	+				-0.7
3,196,620	-				+2.8
3,196,620	-				-1.8
3,196,620	-				-1.2
3,196,652	-				-2.1
3,196,724	+				+1.5
3,196,724	+				+1.2
3,196,725	-				+3.5
3,196,725	-				-2.5
3,196,725	-				-2.7
3,196,761	+		IAI47_15160	0.12	-2.1
3,196,870	+		IAI47_15160	0.19	-0.1
3,196,969	+		IAI47_15160	0.25	+1.5
3,196,969	+		IAI47_15160	0.25	+2.9