Strain Fitness in Pantoea sp. MT58 around IAI47_14820

Experiment: Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,123,337	+				-0.6
3,123,338	-				-2.4
3,123,467	+				-1.2
3,123,467	+				-0.5
3,123,468	-				+0.0
3,123,482	+				+0.3
3,123,482	+				-2.3
3,123,482	+				-0.7
3,123,482	+				+0.8
3,123,483	-				+0.5
3,123,483	-				+1.0
3,123,483	-				-3.6
3,123,483	-				-1.1
3,123,484	+				-1.4
3,123,522	+				-0.6
3,123,523	-				-1.8
3,123,542	+				-0.8
3,123,543	-				+0.4
3,123,555	-		IAI47_14815	0.11	-1.2
3,123,555	-		IAI47_14815	0.11	-0.2
3,123,555	-		IAI47_14815	0.11	+2.9
3,123,555	-		IAI47_14815	0.11	+0.3
3,123,721	-		IAI47_14815	0.39	-1.4
3,123,837	+		IAI47_14815	0.59	+0.2
3,123,837	+		IAI47_14815	0.59	-2.5
3,123,837	+		IAI47_14815	0.59	-2.3
3,123,838	-		IAI47_14815	0.59	-1.0
3,123,898	+		IAI47_14815	0.70	-1.1
3,123,898	+		IAI47_14815	0.70	+0.4
3,123,899	-		IAI47_14815	0.70	+3.7
3,123,979	+		IAI47_14815	0.84	-0.6
3,123,979	+		IAI47_14815	0.84	-1.4
3,123,979	+		IAI47_14815	0.84	+1.0
3,123,980	-		IAI47_14815	0.84	+1.7
3,123,980	-		IAI47_14815	0.84	-0.4
3,123,980	-		IAI47_14815	0.84	-0.6
3,123,980	-		IAI47_14815	0.84	+0.6
3,124,000	+		IAI47_14815	0.87	-0.4
3,124,000	+		IAI47_14815	0.87	+0.6
3,124,000	+		IAI47_14815	0.87	+0.3
3,124,000	+		IAI47_14815	0.87	-2.6
3,124,000	+		IAI47_14815	0.87	+3.1
3,124,000	+		IAI47_14815	0.87	+2.1
3,124,000	+		IAI47_14815	0.87	+1.0
3,124,000	+		IAI47_14815	0.87	+4.0
3,124,001	-		IAI47_14815	0.87	-2.4
3,124,001	-		IAI47_14815	0.87	+2.5
3,124,001	-		IAI47_14815	0.87	-2.1
3,124,001	-		IAI47_14815	0.87	-2.8
3,124,027	-				+2.4
3,124,044	-				+1.5
3,124,072	+				+0.3
3,124,072	+				+0.6
3,124,072	+				+1.3
3,124,123	+				-1.6
3,124,169	-				+3.2
3,124,169	-				-1.1
3,124,179	+				-0.4
3,124,179	+				+1.6
3,124,179	+				+0.0
3,124,179	+				-0.7
3,124,200	+				+2.6
3,124,200	+				+1.7
3,124,200	+				-2.1
3,124,200	+				+4.4
3,124,200	+				+1.5
3,124,201	-				-0.2
3,124,201	-				-0.6
3,124,201	-				-0.8
3,124,201	-				-1.5
3,124,205	-				-2.3
3,124,205	-				-3.0
3,124,205	-				+2.4
3,124,205	-				-2.5
3,124,215	+				-0.6
3,124,215	+				-1.2
3,124,216	-				+1.0
3,124,270	+				-2.4
3,124,307	+				-0.5
3,124,307	+				+2.0
3,124,324	+				+1.6
3,124,372	+		IAI47_14820	0.11	+0.0
3,124,372	+		IAI47_14820	0.11	+1.0
3,124,394	+		IAI47_14820	0.14	-1.6
3,124,395	-		IAI47_14820	0.14	+1.6
3,124,443	+		IAI47_14820	0.20	-3.2
3,124,443	+		IAI47_14820	0.20	-0.8
3,124,444	-		IAI47_14820	0.20	+2.8
3,124,457	+		IAI47_14820	0.22	-0.4
3,124,461	+		IAI47_14820	0.22	-0.5
3,124,461	+		IAI47_14820	0.22	-0.7
3,124,461	+		IAI47_14820	0.22	-2.0
3,124,462	-		IAI47_14820	0.22	+2.3
3,124,462	-		IAI47_14820	0.22	+2.1
3,124,462	-		IAI47_14820	0.22	-0.7
3,124,462	-		IAI47_14820	0.22	-1.1
3,124,501	+		IAI47_14820	0.27	-2.0
3,124,502	-		IAI47_14820	0.27	-1.3
3,124,542	+		IAI47_14820	0.32	-0.4
3,124,543	-		IAI47_14820	0.32	+4.2
3,124,597	-		IAI47_14820	0.39	+1.7
3,124,597	-		IAI47_14820	0.39	+1.1
3,124,597	-		IAI47_14820	0.39	-1.8
3,124,662	+		IAI47_14820	0.47	+0.6
3,124,663	-		IAI47_14820	0.47	+0.6
3,124,710	+		IAI47_14820	0.53	-0.8
3,124,711	-		IAI47_14820	0.53	-1.4
3,124,760	+		IAI47_14820	0.59	+0.6
3,124,760	+		IAI47_14820	0.59	+0.3
3,124,761	-		IAI47_14820	0.59	-0.8
3,124,800	+		IAI47_14820	0.64	+0.0
3,124,823	+		IAI47_14820	0.67	+1.8
3,124,823	+		IAI47_14820	0.67	+4.0
3,124,824	-		IAI47_14820	0.67	-2.1
3,124,845	+		IAI47_14820	0.69	-1.6
3,124,845	+		IAI47_14820	0.69	+0.0
3,124,845	+		IAI47_14820	0.69	+0.9
3,124,845	+		IAI47_14820	0.69	-1.3
3,124,846	-		IAI47_14820	0.69	-1.8
3,124,846	-		IAI47_14820	0.69	+0.6
3,124,846	-		IAI47_14820	0.69	-3.1
3,124,846	-		IAI47_14820	0.69	-2.0
3,124,846	-		IAI47_14820	0.69	-0.7
3,124,846	-		IAI47_14820	0.69	+3.2
3,124,846	-		IAI47_14820	0.69	-2.2
3,124,869	+		IAI47_14820	0.72	+0.1
3,124,870	-		IAI47_14820	0.72	-0.5
3,124,870	-		IAI47_14820	0.72	-0.7
3,124,907	-		IAI47_14820	0.77	-0.2
3,124,909	+		IAI47_14820	0.77	+0.0
3,124,909	+		IAI47_14820	0.77	-1.4
3,124,909	+		IAI47_14820	0.77	+1.5
3,124,909	+		IAI47_14820	0.77	-3.0
3,124,909	+		IAI47_14820	0.77	+0.3
3,124,909	+		IAI47_14820	0.77	-1.8
3,124,909	+		IAI47_14820	0.77	+1.5
3,124,909	+		IAI47_14820	0.77	+2.2
3,124,910	-		IAI47_14820	0.77	-0.4
3,124,910	-		IAI47_14820	0.77	-2.2
3,124,910	-		IAI47_14820	0.77	-0.8
3,124,910	-		IAI47_14820	0.77	-2.4
3,124,910	-		IAI47_14820	0.77	-0.1
3,124,910	-		IAI47_14820	0.77	+1.6
3,124,910	-		IAI47_14820	0.77	+1.7
3,124,910	-		IAI47_14820	0.77	-1.2
3,124,910	-		IAI47_14820	0.77	-0.2
3,124,920	+		IAI47_14820	0.78	+1.0
3,124,920	+		IAI47_14820	0.78	+1.4
3,124,920	+		IAI47_14820	0.78	+2.6
3,124,920	+		IAI47_14820	0.78	+0.6
3,124,920	+		IAI47_14820	0.78	-1.9
3,124,920	+		IAI47_14820	0.78	+0.3
3,124,920	+		IAI47_14820	0.78	+1.0
3,124,920	+		IAI47_14820	0.78	+0.6
3,124,921	-		IAI47_14820	0.79	-0.5
3,124,921	-		IAI47_14820	0.79	-0.0
3,124,921	-		IAI47_14820	0.79	+1.5
3,124,921	-		IAI47_14820	0.79	+0.9
3,124,921	-		IAI47_14820	0.79	-3.0
3,124,921	-		IAI47_14820	0.79	-1.2
3,124,987	+		IAI47_14820	0.87	+0.1
3,124,987	+		IAI47_14820	0.87	-0.4
3,124,988	-		IAI47_14820	0.87	-1.8
3,124,988	-		IAI47_14820	0.87	-2.0
3,125,057	+				-0.8
3,125,058	-				+4.0
3,125,092	+				+3.5
3,125,093	-				-1.0
3,125,093	-				-0.7
3,125,150	+				-0.3
3,125,176	+				+0.5
3,125,177	-				-0.4
3,125,192	+				-0.7
3,125,317	+		IAI47_14825	0.18	+0.3
3,125,317	+		IAI47_14825	0.18	-2.2
3,125,334	+		IAI47_14825	0.19	-0.3
3,125,410	+		IAI47_14825	0.25	+0.5
3,125,410	+		IAI47_14825	0.25	+0.0
3,125,410	+		IAI47_14825	0.25	+1.6
3,125,410	+		IAI47_14825	0.25	+1.9
3,125,410	+		IAI47_14825	0.25	-1.5
3,125,411	-		IAI47_14825	0.25	+0.0
3,125,411	-		IAI47_14825	0.25	-0.8
3,125,411	-		IAI47_14825	0.25	+4.2
3,125,411	-		IAI47_14825	0.25	+3.6
3,125,411	-		IAI47_14825	0.25	-1.3
3,125,411	-		IAI47_14825	0.25	+1.0
3,125,411	-		IAI47_14825	0.25	-1.8
3,125,504	+		IAI47_14825	0.33	+2.1
3,125,504	+		IAI47_14825	0.33	+2.7
3,125,504	+		IAI47_14825	0.33	-1.3
3,125,504	+		IAI47_14825	0.33	-1.8
3,125,504	+		IAI47_14825	0.33	-2.4
3,125,504	+		IAI47_14825	0.33	+2.6
3,125,504	+		IAI47_14825	0.33	+3.0
3,125,505	-		IAI47_14825	0.33	+0.3
3,125,730	+		IAI47_14825	0.51	+0.3
3,125,730	+		IAI47_14825	0.51	-2.8
3,125,730	+		IAI47_14825	0.51	+1.1
3,125,730	+		IAI47_14825	0.51	+0.3
3,125,730	+		IAI47_14825	0.51	-0.4
3,125,730	+		IAI47_14825	0.51	-0.3
3,125,730	+		IAI47_14825	0.51	+0.2
3,125,730	+		IAI47_14825	0.51	+0.0
3,125,734	+		IAI47_14825	0.51	+1.4
3,125,734	+		IAI47_14825	0.51	+1.1
3,125,734	+		IAI47_14825	0.51	-0.8
3,125,734	+		IAI47_14825	0.51	+0.0
3,125,735	-		IAI47_14825	0.51	+3.6
3,125,735	-		IAI47_14825	0.51	-1.0
3,125,735	-		IAI47_14825	0.51	+1.9
3,125,735	-		IAI47_14825	0.51	+2.8
3,125,735	-		IAI47_14825	0.51	-1.6
3,125,735	-		IAI47_14825	0.51	+0.0
3,125,735	-		IAI47_14825	0.51	+2.6
3,125,735	-		IAI47_14825	0.51	+2.0
3,125,740	+		IAI47_14825	0.51	-0.2
3,125,788	+		IAI47_14825	0.55	+2.3
3,125,788	+		IAI47_14825	0.55	-1.0
3,125,789	-		IAI47_14825	0.55	-2.3
3,125,789	-		IAI47_14825	0.55	+0.5
3,125,881	+		IAI47_14825	0.63	+0.3
3,125,882	-		IAI47_14825	0.63	+3.5
3,125,882	-		IAI47_14825	0.63	+3.3
3,125,898	+		IAI47_14825	0.64	+2.6
3,125,898	+		IAI47_14825	0.64	-0.1
3,125,899	-		IAI47_14825	0.64	-1.8
3,125,899	-		IAI47_14825	0.64	+0.7
3,125,905	+		IAI47_14825	0.64	-0.2
3,125,905	+		IAI47_14825	0.64	-1.6
3,125,930	+		IAI47_14825	0.66	+1.8
3,125,937	+		IAI47_14825	0.67	+1.0
3,125,938	-		IAI47_14825	0.67	-1.6
3,126,042	+		IAI47_14825	0.75	-0.4
3,126,042	+		IAI47_14825	0.75	+0.4
3,126,042	+		IAI47_14825	0.75	-1.3
3,126,043	-		IAI47_14825	0.75	-0.1
3,126,043	-		IAI47_14825	0.75	+4.3
3,126,043	-		IAI47_14825	0.75	-1.5
3,126,043	-		IAI47_14825	0.75	-1.0
3,126,043	-		IAI47_14825	0.75	-1.3
3,126,043	-		IAI47_14825	0.75	-0.4
3,126,054	-		IAI47_14825	0.76	-1.0
3,126,054	-		IAI47_14825	0.76	-1.3
3,126,054	-		IAI47_14825	0.76	+1.0
3,126,061	+		IAI47_14825	0.77	+2.7