Strain Fitness in Pantoea sp. MT58 around IAI47_14190

Experiment: Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,997,262	+				-1.5
2,997,262	+				-2.2
2,997,281	+				-1.8
2,997,282	-				-2.1
2,997,282	-				+0.9
2,997,282	-				-0.3
2,997,352	+				+2.1
2,997,353	-				-1.8
2,997,452	+		IAI47_14185	0.26	+3.3
2,997,452	+		IAI47_14185	0.26	-0.8
2,997,452	+		IAI47_14185	0.26	+3.3
2,997,452	+		IAI47_14185	0.26	+0.3
2,997,453	-		IAI47_14185	0.26	-1.1
2,997,453	-		IAI47_14185	0.26	-2.6
2,997,453	-		IAI47_14185	0.26	+2.5
2,997,453	-		IAI47_14185	0.26	-1.4
2,997,453	-		IAI47_14185	0.26	+1.3
2,997,453	-		IAI47_14185	0.26	+2.6
2,997,453	-		IAI47_14185	0.26	-2.5
2,997,547	+		IAI47_14185	0.42	+0.6
2,997,547	+		IAI47_14185	0.42	-0.8
2,997,547	+		IAI47_14185	0.42	+2.6
2,997,548	-		IAI47_14185	0.42	-0.8
2,997,614	-		IAI47_14185	0.53	+0.5
2,997,669	+		IAI47_14185	0.62	+0.6
2,997,670	-		IAI47_14185	0.62	+1.7
2,997,670	-		IAI47_14185	0.62	-0.4
2,997,765	+		IAI47_14185	0.78	-1.1
2,997,766	-		IAI47_14185	0.78	+3.6
2,997,794	+		IAI47_14185	0.83	-1.9
2,997,795	-		IAI47_14185	0.83	-1.8
2,997,817	+		IAI47_14185	0.87	+3.3
2,997,817	+		IAI47_14185	0.87	-0.2
2,997,817	+		IAI47_14185	0.87	-2.2
2,997,817	+		IAI47_14185	0.87	+0.6
2,997,817	+		IAI47_14185	0.87	-1.4
2,997,818	-		IAI47_14185	0.87	-0.8
2,997,818	-		IAI47_14185	0.87	-0.6
2,997,818	-		IAI47_14185	0.87	-1.1
2,997,818	-		IAI47_14185	0.87	+0.0
2,997,818	-		IAI47_14185	0.87	+5.4
2,997,818	-		IAI47_14185	0.87	-1.1
2,997,818	-		IAI47_14185	0.87	+3.2
2,997,818	-		IAI47_14185	0.87	+2.2
2,997,818	-		IAI47_14185	0.87	-0.8
2,997,837	-				+2.4
2,997,837	-				-1.0
2,997,850	+				+0.3
2,997,850	+				-0.2
2,997,895	+				+1.0
2,997,895	+				+5.4
2,997,896	-				+1.9
2,997,912	-				-1.6
2,997,942	-				+2.2
2,997,965	-				+0.9
2,997,965	-				-2.5
2,997,969	+				-0.7
2,997,969	+				+1.9
2,997,970	-				-1.2
2,997,970	-				+1.0
2,997,970	-				-0.7
2,997,970	-				-1.3
2,997,970	-				+1.3
2,997,970	-				-1.0
2,997,970	-				-0.2
2,997,982	-				+1.1
2,998,007	-				-0.8
2,998,007	-				+1.2
2,998,015	+				-2.2
2,998,016	-				-0.6
2,998,073	+				-1.2
2,998,073	+				-2.7
2,998,074	-				-1.0
2,998,108	+				+1.6
2,998,109	-				+0.4
2,998,109	-				+0.5
2,998,120	+				+2.6
2,998,146	-				+4.8
2,998,150	-				+1.8
2,998,182	+				-0.2
2,998,186	+				+0.3
2,998,186	+				+0.5
2,998,186	+				+1.0
2,998,220	-				+0.7
2,998,240	+				-0.4
2,998,254	-				+2.5
2,998,295	+		IAI47_14190	0.19	-0.2
2,998,296	-		IAI47_14190	0.20	-0.7
2,998,392	+		IAI47_14190	0.60	+0.3
2,998,392	+		IAI47_14190	0.60	+1.1
2,998,393	-		IAI47_14190	0.61	+2.6
2,998,393	-		IAI47_14190	0.61	-0.8
2,998,444	-		IAI47_14190	0.82	-2.4
2,998,479	+				+0.6
2,998,483	+				+1.4
2,998,515	-				+1.6
2,998,542	-				+0.8
2,998,593	+				+3.1
2,998,593	+				-3.1
2,998,629	+				+1.6
2,998,629	+				-0.6
2,998,630	-				-0.8
2,998,631	+				+1.6
2,998,632	-				+0.9
2,998,632	-				+1.6
2,998,644	+				-1.0
2,998,645	-				-2.3
2,998,646	+				-1.0
2,998,687	+				+0.0
2,998,688	-				-1.0
2,998,688	-				+0.3
2,998,688	-				+4.3
2,998,688	-				+1.6
2,998,717	+		IAI47_14195	0.11	+1.7
2,998,718	-		IAI47_14195	0.11	-0.2
2,998,718	-		IAI47_14195	0.11	-0.5
2,998,718	-		IAI47_14195	0.11	-1.0
2,998,718	-		IAI47_14195	0.11	-1.5
2,998,764	-		IAI47_14195	0.19	+2.1
2,998,796	+		IAI47_14195	0.25	+0.3
2,998,796	+		IAI47_14195	0.25	-0.7
2,998,796	+		IAI47_14195	0.25	-2.7
2,998,796	+		IAI47_14195	0.25	+2.7
2,998,797	-		IAI47_14195	0.25	+0.3
2,998,797	-		IAI47_14195	0.25	+2.0
2,998,797	-		IAI47_14195	0.25	+2.0
2,998,843	+		IAI47_14195	0.33	-2.4
2,998,843	+		IAI47_14195	0.33	-3.0
2,998,843	+		IAI47_14195	0.33	-0.7
2,998,843	+		IAI47_14195	0.33	-2.5
2,998,844	-		IAI47_14195	0.33	-0.4
2,998,844	-		IAI47_14195	0.33	-1.3
2,998,844	-		IAI47_14195	0.33	+0.0
2,998,855	+		IAI47_14195	0.35	-2.4
2,998,855	+		IAI47_14195	0.35	+2.2
2,998,855	+		IAI47_14195	0.35	-0.1
2,998,856	-		IAI47_14195	0.35	+1.0
2,998,856	-		IAI47_14195	0.35	-1.6
2,998,856	-		IAI47_14195	0.35	-2.4
2,998,887	-		IAI47_14195	0.40	+2.6
2,998,926	+		IAI47_14195	0.47	+1.6
2,998,926	+		IAI47_14195	0.47	+0.3
2,998,975	+		IAI47_14195	0.55	-2.3
2,998,975	+		IAI47_14195	0.55	-2.6
2,998,975	+		IAI47_14195	0.55	+2.6
2,998,975	+		IAI47_14195	0.55	+0.7
2,998,976	-		IAI47_14195	0.55	+2.0
2,998,976	-		IAI47_14195	0.55	-1.2
2,998,976	-		IAI47_14195	0.55	+3.7
2,998,976	-		IAI47_14195	0.55	+3.1
2,998,976	-		IAI47_14195	0.55	-0.7
2,998,976	-		IAI47_14195	0.55	+2.0
2,998,976	-		IAI47_14195	0.55	+1.6
2,998,976	-		IAI47_14195	0.55	-1.1
2,999,051	+		IAI47_14195	0.68	-3.0
2,999,051	+		IAI47_14195	0.68	-0.9
2,999,051	+		IAI47_14195	0.68	-3.7
2,999,051	+		IAI47_14195	0.68	-1.8
2,999,051	+		IAI47_14195	0.68	+0.7
2,999,051	+		IAI47_14195	0.68	+3.8
2,999,051	+		IAI47_14195	0.68	+4.9
2,999,052	-		IAI47_14195	0.69	+2.1
2,999,052	-		IAI47_14195	0.69	+0.3
2,999,052	-		IAI47_14195	0.69	+1.6
2,999,052	-		IAI47_14195	0.69	-1.0
2,999,053	+		IAI47_14195	0.69	-1.8
2,999,072	+		IAI47_14195	0.72	-1.0
2,999,078	+		IAI47_14195	0.73	-2.7
2,999,078	+		IAI47_14195	0.73	-1.4
2,999,079	-		IAI47_14195	0.73	+1.9
2,999,079	-		IAI47_14195	0.73	-2.8
2,999,134	+		IAI47_14195	0.83	-2.3
2,999,145	-		IAI47_14195	0.85	-1.9
2,999,170	+		IAI47_14195	0.89	+2.7
2,999,170	+		IAI47_14195	0.89	+1.6
2,999,210	+				-2.1
2,999,211	-				+2.6
2,999,211	-				-0.2
2,999,213	+				+1.1
2,999,263	+				+1.6
2,999,275	-				+0.6
2,999,304	-				+2.0
2,999,315	+				-0.4
2,999,338	+				+1.7
2,999,390	+				-1.5