Strain Fitness in Pantoea sp. MT58 around IAI47_13255

Experiment: Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,801,376	+				-2.5
2,801,384	+				+0.7
2,801,384	+				-2.0
2,801,384	+				-1.5
2,801,385	-				-1.4
2,801,385	-				+0.6
2,801,401	+				-1.1
2,801,407	+				+1.0
2,801,407	+				-1.3
2,801,407	+				-1.1
2,801,407	+				-2.2
2,801,408	-				+3.5
2,801,408	-				-1.1
2,801,408	-				-1.0
2,801,412	-				+0.1
2,801,428	+				+3.3
2,801,429	-				+1.4
2,801,463	+				+1.0
2,801,464	-				-0.0
2,801,507	+				-2.7
2,801,545	-				+1.0
2,801,555	-				-1.7
2,801,631	+		IAI47_13250	0.11	-1.2
2,801,632	-		IAI47_13250	0.11	+3.6
2,801,652	+		IAI47_13250	0.14	+0.3
2,801,652	+		IAI47_13250	0.14	+2.1
2,801,652	+		IAI47_13250	0.14	-3.4
2,801,652	+		IAI47_13250	0.14	+2.6
2,801,652	+		IAI47_13250	0.14	-0.8
2,801,652	+		IAI47_13250	0.14	+1.5
2,801,652	+		IAI47_13250	0.14	-0.7
2,801,652	+		IAI47_13250	0.14	-0.3
2,801,652	+		IAI47_13250	0.14	+2.3
2,801,653	-		IAI47_13250	0.14	-1.5
2,801,653	-		IAI47_13250	0.14	+0.6
2,801,653	-		IAI47_13250	0.14	-1.3
2,801,653	-		IAI47_13250	0.14	-2.1
2,801,689	+		IAI47_13250	0.18	-2.2
2,801,689	+		IAI47_13250	0.18	+2.8
2,801,689	+		IAI47_13250	0.18	-3.1
2,801,689	+		IAI47_13250	0.18	+0.0
2,801,689	+		IAI47_13250	0.18	+1.7
2,801,690	-		IAI47_13250	0.19	+2.7
2,801,690	-		IAI47_13250	0.19	+1.6
2,801,690	-		IAI47_13250	0.19	-2.3
2,801,690	-		IAI47_13250	0.19	-1.2
2,801,709	+		IAI47_13250	0.21	-1.3
2,801,709	+		IAI47_13250	0.21	+0.0
2,801,709	+		IAI47_13250	0.21	+0.3
2,801,710	-		IAI47_13250	0.21	-2.0
2,801,724	+		IAI47_13250	0.23	-1.8
2,801,724	+		IAI47_13250	0.23	-2.5
2,801,724	+		IAI47_13250	0.23	-1.0
2,801,725	-		IAI47_13250	0.23	-2.5
2,801,725	-		IAI47_13250	0.23	+0.6
2,801,747	-		IAI47_13250	0.26	-0.8
2,801,761	-		IAI47_13250	0.28	-0.5
2,801,780	+		IAI47_13250	0.30	-2.0
2,801,781	-		IAI47_13250	0.30	+0.2
2,801,781	-		IAI47_13250	0.30	-1.8
2,801,781	-		IAI47_13250	0.30	+2.8
2,801,812	+		IAI47_13250	0.34	+0.8
2,801,812	+		IAI47_13250	0.34	+2.2
2,801,812	+		IAI47_13250	0.34	+3.3
2,801,813	-		IAI47_13250	0.34	+0.0
2,801,846	-		IAI47_13250	0.38	-1.7
2,801,967	+		IAI47_13250	0.54	-2.5
2,801,967	+		IAI47_13250	0.54	+1.0
2,801,967	+		IAI47_13250	0.54	+2.2
2,801,968	-		IAI47_13250	0.54	+0.6
2,801,968	-		IAI47_13250	0.54	-0.4
2,801,968	-		IAI47_13250	0.54	+0.3
2,801,968	-		IAI47_13250	0.54	+0.3
2,801,991	+		IAI47_13250	0.57	+0.3
2,802,022	+		IAI47_13250	0.60	+3.6
2,802,090	+		IAI47_13250	0.69	+1.8
2,802,090	+		IAI47_13250	0.69	+0.3
2,802,118	+		IAI47_13250	0.73	+1.4
2,802,141	+		IAI47_13250	0.76	+1.2
2,802,152	+		IAI47_13250	0.77	+2.1
2,802,153	-		IAI47_13250	0.77	-2.5
2,802,153	-		IAI47_13250	0.77	-0.8
2,802,153	-		IAI47_13250	0.77	+0.6
2,802,153	-		IAI47_13250	0.77	+1.4
2,802,153	-		IAI47_13250	0.77	+3.2
2,802,153	-		IAI47_13250	0.77	+2.2
2,802,186	+		IAI47_13250	0.81	-2.1
2,802,239	+		IAI47_13250	0.88	-1.0
2,802,240	-		IAI47_13250	0.88	+0.6
2,802,321	+				+1.9
2,802,321	+				-0.8
2,802,321	+				-1.4
2,802,322	-				-1.5
2,802,322	-				+0.8
2,802,322	-				+0.5
2,802,350	+				+1.8
2,802,351	-				-1.5
2,802,351	-				+0.0
2,802,351	-				+3.3
2,802,354	+				-0.7
2,802,354	+				+2.4
2,802,354	+				-0.6
2,802,355	-				-1.9
2,802,355	-				+2.6
2,802,355	-				-1.1
2,802,355	-				-0.8
2,802,355	-				-1.0
2,802,747	-		IAI47_13255	0.34	-2.2
2,802,747	-		IAI47_13255	0.34	+1.6
2,802,747	-		IAI47_13255	0.34	+0.6
2,802,840	+		IAI47_13255	0.42	-1.9
2,802,841	-		IAI47_13255	0.42	-0.4
2,802,841	-		IAI47_13255	0.42	-1.3
2,802,841	-		IAI47_13255	0.42	-0.0
2,802,972	+		IAI47_13255	0.53	-0.2
2,802,972	+		IAI47_13255	0.53	-2.9
2,802,984	+		IAI47_13255	0.54	+0.0
2,802,999	+		IAI47_13255	0.55	+0.9
2,803,000	-		IAI47_13255	0.55	-0.5
2,803,000	-		IAI47_13255	0.55	-0.2
2,803,128	+		IAI47_13255	0.65	+4.2
2,803,128	+		IAI47_13255	0.65	+0.8
2,803,128	+		IAI47_13255	0.65	-0.7
2,803,129	-		IAI47_13255	0.66	+1.8
2,803,129	-		IAI47_13255	0.66	+0.0
2,803,268	+		IAI47_13255	0.77	-0.5
2,803,268	+		IAI47_13255	0.77	+0.0
2,803,269	-		IAI47_13255	0.77	+0.3
2,803,269	-		IAI47_13255	0.77	-0.7
2,803,269	-		IAI47_13255	0.77	-1.5
2,803,332	+		IAI47_13255	0.82	+0.6
2,803,332	+		IAI47_13255	0.82	+0.3
2,803,332	+		IAI47_13255	0.82	-1.3
2,803,333	-		IAI47_13255	0.82	+0.2
2,803,429	+				-1.8
2,803,429	+				+3.6
2,803,437	+				+2.4
2,803,438	-				-0.8
2,803,478	+				-1.3
2,803,478	+				-0.2
2,803,479	-				+1.0
2,803,479	-				-1.5
2,803,479	-				+2.0
2,803,497	+				-1.3
2,803,498	-				+2.5
2,803,498	-				+2.6
2,803,519	+				-1.0
2,803,523	+				+2.1
2,803,524	+				+3.7
2,803,524	+				+0.6
2,803,524	+				-0.6
2,803,525	-				+1.9
2,803,525	-				+0.0
2,803,525	-				-2.6
2,803,525	-				+2.3
2,803,525	-				+1.9
2,803,528	+				+2.3
2,803,528	+				+2.9
2,803,529	-				-2.0
2,803,529	-				+2.7
2,803,529	-				-1.8
2,803,529	-				+5.3
2,803,556	+				+4.7
2,803,556	+				+0.4
2,803,557	-				-2.7
2,803,571	+				+2.0
2,803,571	+				-2.2
2,803,593	-				+1.5
2,803,598	+				-0.5
2,803,599	-				-0.4
2,803,688	+				-2.5
2,803,688	+				-3.5
2,803,689	-				+2.6
2,803,689	-				-2.1
2,803,697	+				+3.1
2,803,698	-				-1.5
2,803,698	-				-0.5
2,803,712	+				-0.5
2,803,713	-				-1.9
2,803,771	+		IAI47_13260	0.10	+0.0
2,803,772	-		IAI47_13260	0.11	+2.3
2,803,884	+		IAI47_13260	0.19	+2.2
2,803,884	+		IAI47_13260	0.19	+1.1
2,803,885	-		IAI47_13260	0.19	+1.6
2,803,925	+		IAI47_13260	0.22	-0.4
2,803,941	+		IAI47_13260	0.23	-2.2
2,803,941	+		IAI47_13260	0.23	-1.3
2,803,941	+		IAI47_13260	0.23	-1.1
2,803,941	+		IAI47_13260	0.23	-1.0
2,803,942	-		IAI47_13260	0.23	+2.7
2,803,942	-		IAI47_13260	0.23	+3.4
2,803,965	+		IAI47_13260	0.25	+0.3
2,803,966	-		IAI47_13260	0.25	-2.0
2,803,966	-		IAI47_13260	0.25	+0.6
2,803,966	-		IAI47_13260	0.25	+0.0
2,803,989	+		IAI47_13260	0.27	+0.3
2,803,990	-		IAI47_13260	0.27	-1.9
2,803,990	-		IAI47_13260	0.27	-0.4
2,803,990	-		IAI47_13260	0.27	-1.4
2,804,019	+		IAI47_13260	0.29	-1.4
2,804,019	+		IAI47_13260	0.29	+1.7
2,804,019	+		IAI47_13260	0.29	+3.5
2,804,019	+		IAI47_13260	0.29	-0.4
2,804,019	+		IAI47_13260	0.29	-0.8
2,804,019	+		IAI47_13260	0.29	-1.7
2,804,020	-		IAI47_13260	0.29	+2.7
2,804,020	-		IAI47_13260	0.29	-1.3
2,804,020	-		IAI47_13260	0.29	-1.4
2,804,020	-		IAI47_13260	0.29	+3.0
2,804,101	-		IAI47_13260	0.35	+3.6
2,804,101	-		IAI47_13260	0.35	+0.7
2,804,101	-		IAI47_13260	0.35	-0.2
2,804,101	-		IAI47_13260	0.35	-0.8
2,804,106	+		IAI47_13260	0.35	+1.6
2,804,106	+		IAI47_13260	0.35	-0.0
2,804,107	-		IAI47_13260	0.35	-2.2
2,804,107	-		IAI47_13260	0.35	-0.4
2,804,107	-		IAI47_13260	0.35	+2.6
2,804,153	+		IAI47_13260	0.39	+1.3
2,804,153	+		IAI47_13260	0.39	+0.0
2,804,172	+		IAI47_13260	0.40	+0.0
2,804,173	-		IAI47_13260	0.40	-0.4
2,804,173	-		IAI47_13260	0.40	-0.5
2,804,173	-		IAI47_13260	0.40	-2.2
2,804,260	+		IAI47_13260	0.47	+3.9
2,804,260	+		IAI47_13260	0.47	+0.4
2,804,319	-		IAI47_13260	0.51	+0.6
2,804,405	+		IAI47_13260	0.57	+0.3
2,804,405	+		IAI47_13260	0.57	+1.6
2,804,405	+		IAI47_13260	0.57	-0.5